Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01792 ATGGCTGACTCGGACAACGACTCGGGCGGGGCGCAGAACGCGGGAAACAGTGGGAACTTCAGCGAGTTGTCGCCTCGGGAACAGGACCGGTTTCTTCCCATAGCGAACGTGAGCAGGATCATGAAGAAGGCTCTGCCAGCGAACGCGAAGATCTCGAAGGACGCGAAGGAGACGGTTCAGGAATGTGTGTCGGAGTTCATCAGCTTCATAACTGGCGAGGCCTCCGACAAGTGCCAGCGAGAGAAGCGCAAGACCATCAACGGCGACGACCTTCTCTGGGCCATGACCACCCTCGGATTCGAAGACTACGTCGAGCCTCTCAAGATTTACCTCCAGCGCTTCCGCGAGATGGAGGGGGAGAAGACCGTGGCCGCGCGCGACAAGGACGCCGCCTCCGCCTCCGCCGTCAACGCCTACGACTACCCTCCCTCCGCCGCCGCCGCCATGATGCATCATCAGGGACACGTGTACGGCTCCCCTGCTTACCATCAAGTGCCTGTCACTGCCGCTAGTGCCGCTCCTGTTATGGGTAAGCCTGGGCCTGGGCCCACTTATCCTGCCCCTGGTAGACCCAGATAG 579 0.6114 MADSDNDSGGAQNAGNSGNFSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQRFREMEGEKTVAARDKDAASASAVNAYDYPPSAAAAMMHHQGHVYGSPAYHQVPVTAASAAPVMGKPGPGPTYPAPGRPR 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01792 192 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 5 137 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pumo9g01792 192 MobiDBLite consensus disorder prediction 172 192 - -
Pumo9g01792 192 Gene3D Histone, subunit A 20 151 IPR009072 GO:0046982
Pumo9g01792 192 FunFam Nuclear transcription factor Y subunit B-3 20 142 - -
Pumo9g01792 192 MobiDBLite consensus disorder prediction 1 27 - -
Pumo9g01792 192 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Pumo9g01792 192 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Pumo9g01792 192 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Pumo9g01792 192 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Pumo9g01792 192 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pumo9g01792 192 SUPERFAMILY Histone-fold 28 133 IPR009072 GO:0046982
Pumo9g01792 192 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01792 Pumo-Chr9 47083275 47084355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01792 1 125 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.600 2.67e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pumo9g01792 CBFD_NFYB_HMF 1.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01792 K08065 - gmx:100500556 283.493