Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01788 ATGGAACATGGAAAATCTTTCTTTCATTATGGTCAGCCCGAAAAATCAAGCTCTGATTCAAACCCTTTGCATGGTGAAGGGAATAGCAGTTCTGAACAGCAGAAGCAGGTGGCGCAACAAGCCGAAGCTGCGATTGAAGAAAATCGAACCGTGCCCATGGCGTGCGTGCAAAGGCTGATACGCAATTTTCTTCCAAGTTATGCGAAAGTCAGCGATGAATCCAAGGTCAAAATAGTTGAGTGTGTTACTGAGTTCATCAGCTTGATCACTGTGGTGGCTAACCACCGTTGCCAAGTGGAGCAACGCAAAACTGTTACTGCTGAAGACTTGTTATATGCTATGGCCAAGTTAGGTTTCAATAACTACGCTGAGCTTCTCACCCTTTACCTCCATCGCTATCGTCAGCATCATGAAGGTGATAACCGAGTCCCACATCGTGTGGGGTCGCTTCCAACACTGCCAGCAATTGTGAATATAAATGATGCTGTGCCACCACCAACTTCTTCTGTTGGTGGTTTCCCAGTGATCCCTCCAATAGTTCCAAACCCAATTATGGGTGGGTTTTATAGTGATGGGTCAAGTGGTGGTGGTTCTAGTAGCAGTGCCAATGTTGCTTATTTTAATCGTGACAACTCCTTCGGTAACTGA 648 0.4583 MEHGKSFFHYGQPEKSSSDSNPLHGEGNSSSEQQKQVAQQAEAAIEENRTVPMACVQRLIRNFLPSYAKVSDESKVKIVECVTEFISLITVVANHRCQVEQRKTVTAEDLLYAMAKLGFNNYAELLTLYLHRYRQHHEGDNRVPHRVGSLPTLPAIVNINDAVPPPTSSVGGFPVIPPIVPNPIMGGFYSDGSSGGGSSSSANVAYFNRDNSFGN 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01788 215 MobiDBLite consensus disorder prediction 11 43 - -
Pumo9g01788 215 SUPERFAMILY Histone-fold 47 148 IPR009072 GO:0046982
Pumo9g01788 215 MobiDBLite consensus disorder prediction 1 43 - -
Pumo9g01788 215 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 21 140 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pumo9g01788 215 Gene3D Histone, subunit A 44 147 IPR009072 GO:0046982
Pumo9g01788 215 PRINTS CCAAT-binding transcription factor subunit A signature 116 134 - -
Pumo9g01788 215 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Pumo9g01788 215 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Pumo9g01788 215 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 50 114 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01788 Pumo-Chr9 47061180 47063542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01788 46 157 CCAAT-HAP3 Transcription Factor Family AT5G47670 55.357 1.58e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pumo9g01788 CBFD_NFYB_HMF 2.6e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01788 K08065 - ini:109174641 124.405