Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01770 ATGAATTCTAGGTGCTTCCTTCTTCATCCACAACAAGAGTATAGCATGGTTCCATTTTCTTCAAATTCTGCCACAGAAGATAGAGTGGCTAGTGCTCGAACCAGGCCTCCACTTGTCCCCCCTCCTTCCTTTTTGGTTAGGATAGCCATGAGAATATCTAGAGCAAGATGGTTTACCTTTTTAAGAAGAGTTTTTCATTACCAAAATGGATCAAGGTCCAACCTTGGCTCCAACCCTTTCAATTCTAGCACTTGGATGATGCTGGAGTTTATTGCCTTGATTGTCCAAATAACCATTACAACATTCACTTTGGCCATTTCCAAGAGAGAGAGACCTATTTGGCCTATGAGGATATGGATTTCTGGTTATGATATTGGTTGTGTTCTTAATCTGCTGCTACTTTATGGGCGCTACCGTCAAATTTATCTGACACAAGGAGATGCTCTCAGCCTTTCTGATATGGAACAGCAGAGAAACAATGAAGAAACCAGTGTGTACAGGATGTCACACTTGATGAACAAATGCCGGACTTCACTTGAGCTTTTCTTTGCCATATGGTTTGTGATGGGCAATGTTTGGGTTTTTGACTCACGTTTTGGATCTTTTCATCAAGCTCCAAAACTCCATGTGCTCTGCATCATTCTCCTTGCTTGGAATGCAATTTGCTACTCTTTCCCCTTCCTACTGTTTGTGTTGTTATGCTGCTGTGTGCCACTAATTAGCACCCTCCTCGGATACAACATGAACATGGCCTCTTCTGATAGAGGAGCTTCTGATGATCAAATTTCACAACTTCCAAGTTGGAGACATAAAGAAGCCCGTGCCAAGTTGGAGCTTGGCAATGACTCTGAAGGAAGTGAAAAATTTATCAATGAACACTCAGAATGCTGTATCTGCTTAGCCAAGTACAAAGACAAAGAGGAAGTTAGACAATTGCCCTGTTCCCATATGTTCCACCTAAAATGTGTGGATCAATGGCTAAAAATTACATCCTGTTGCCCTCTTTGCAAACAAGGATTACAGAGGTAG 1029 0.4189 MNSRCFLLHPQQEYSMVPFSSNSATEDRVASARTRPPLVPPPSFLVRIAMRISRARWFTFLRRVFHYQNGSRSNLGSNPFNSSTWMMLEFIALIVQITITTFTLAISKRERPIWPMRIWISGYDIGCVLNLLLLYGRYRQIYLTQGDALSLSDMEQQRNNEETSVYRMSHLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSFHQAPKLHVLCIILLAWNAICYSFPFLLFVLLCCCVPLISTLLGYNMNMASSDRGASDDQISQLPSWRHKEARAKLELGNDSEGSEKFINEHSECCICLAKYKDKEEVRQLPCSHMFHLKCVDQWLKITSCCPLCKQGLQR 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01770 342 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 17 340 - -
Pumo9g01770 342 Pfam Ring finger domain 295 337 IPR001841 -
Pumo9g01770 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 341 IPR013083 -
Pumo9g01770 342 SUPERFAMILY RING/U-box 295 340 - -
Pumo9g01770 342 ProSiteProfiles Zinc finger RING-type profile. 296 337 IPR001841 -
Pumo9g01770 342 SMART ring_2 296 336 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01770 Pumo-Chr9 46828270 46831165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01770 31 340 C3H Transcription Factor Family AT4G26580 68.810 2.97e-149 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01770 - - gmx:100813670 652.899