Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01765 ATGCTGAAAAGAATTCAGACCATAGCCATTTACACAACTCTGCTGTCAGGCCCTATCCCAGAAGAGATAGGGAAGTGCAGTGAGTTGCAGAACCTGTACTTGTATCAGAACTCAATCTCTGGTTCAATCCCAAGTCAAATTGGAGAGCTCAGCAAGCTTCAGAATCTTCTCTTATGGCAAAACAATATAGTAGGTACAATCCCAGAAGAGCTTGGAAGCTGCACTCAACTTGAAGTCATAGACTTGTCAGAAAATCTTCTCACAGGTAGCATACCAACCAGTTTTGGTAAGCTATCAATTCTGCAAGGGCTTCAACTGAGTGTTAATAAGCTTTCAGGCATTATACCTCCTGAAATCACAAATTGTACTTCCCTGATTCAACTGGAAGTTGACAACAATGCTATTTCTGGGGAGATTCCTCCTCTTATTGGCAACTTGAGAAGATTGACTCTCTTCTTTGCATGGCAGAACATGCTCACAGGAAAAATCCCAGATAGTCTTTCACAGTGCCAAGACCTTCAGGCACTTGATCTCTCTTACAACAATTTAACTGGTCCAATACCCAAACAACTTTTTGGGTTGAGGAACCTCACTAAACTTCTGCTTCTTTCCAATGATTTGTCAGGCTTTATACCACCTGAGATAGGTAACTGCACAAGCCTCTACAGATTGAGGTTAAACCACAATAGACTGGCAGGTACCATTCCCTCTGAGATCACCAACTTGAAGAATTTGAACTTTCTGGATGTGAGCAGCAATCATCTTGTAGGGGAGATTCCTTCAACACTATCCAGATGCCAAAATCTTGAGTTTCTGGACCTCCATTCAAATAGTCTCATTGGCTCAGTTCCAGACAATCTGCCCAAAAACCTGCAGTTAATTGACCTCTCAGACAACAGGTTAACAGGTGAACTGAGTCATTCCATTGGTTCATTAACTGAATTAACCAAACTCGTCTTGGGAAAGAATCAACTCGGTGGAAGCATCCCAGCAGAGATCCTATCTTGCTCCAAGTTACAACTTCTGGACTTGGGAAGCAATAGTTTCTCTGGAGAAATTCCCAAGGAAGTTGCTCAAATTCCTTCACTAGAAATCTTTCTCAATCTTAGTTGTAACCAGTTTTCTGGCGAAATCCCACCTCAGTTCTCCAGTCTTAGAAAACTTGGAGTGCTTGACCTCTCCCACAACAAGCTCTCAGGGAACTTGGATTCTCTCTCTGACCTTCAGAACCTTGTTTCACTGAATGTTTCCTTCAATGACTTCTCTGGAGAATTGCCTAACACCCCATTCTTCCGGAAACTCCCTCTCAATGATCTCACGGGAAATGATGGTCTCTACATTGTTGGTGGTGTTGTAACTCCAGCTGACAGAAAGGAAGCCAAGGGTCATGCCAGATTGGCTATGAAGATTATAATGTCCATTCTCTTATGCACCAGTGCAGTACTAGTACTTTTCACAATCCATGTCTTGATCCGTGCTCATGTTGCTAACAAAGCACTCAATGGAAACAACTGGGTGATAACTTTGTATCAGAAGTTGGAGTTCTCTATTGATGACATTGTCCGGAACTTGACATCATCCAATGTGATTGGCACCGGAAGCTCTGGAGTTGTGTACAAGGTCACAGTTCCAAATGGCCAAACACTGGCAGTTAAAAAGATGTGGTCATCAGCAGAGTCAGGAGCATTTACTTCTGAAATTCAAGCACTAGGTTCAATTAGACACAAGAACATCATCAAGCTTCAGGGTTGGGGGTCCAGCAAGAACATGAAGCTGCTGTTTTATGAGTACCTCCCTAATGGAAGCCTGAGCTCATTAATTCATGGTTCAGGAAAGGGAAAAGCAGAATGGGAGACCAGATATGATGTTATGTTAGGAGTGGCTCATTCACTTGCATATTTGCACCATGATTGTGTGCCTTCCATATTGCATGGAGATGTCAAAGCCATGAATGTTTTGTTAGGTCCTGGCTATCAGCCTTACCTTGCTGACTTTGGCCTAGCAAGAATTGCAAGTGAAAATGGTGATTATACTAATTCCAAGCCAGTTCAAAGACCCTACCTTGCTGGCTCCTATGGATACATGGCTCCAGAACATGCATCTATGCAGTGGATCACTGAGAAGAGTGATGTGTACAGTTTTGGTGTGGTCCTACTCGAGGTCCTGACAGGAAGACACCCCCTAGACCCAACACTGCCTGGGGGTGCACACTTGGTTCAGTGGGTTAGGAACCACTTAGCTAGCAAAGGAGACCCTCATGACATTCTTGACCCAAAGCTGAGAGAGAGAACTGATTCTACTGTGCATGAAATGCTACAAACTCTAGCCGTGTCATTTCTATGTGTCAGCAACCGAGCTGAGGACCGTCCAACAATGAAGGACACTGTTGCAATGCTCAAGGAAATTCGACCTGTTGAGGCCTCAACCACAGGTCCTGATGTGTTAAAGGGAGTTTCAACAACAGTGCATGTTTCTCCATCACCTCCTAAGAATGTAGTTTCACATGGAACTTCTAACTGTTCCTTTAATTTGTCAGAGGACTCAATCTGTTGA 2553 0.4356 MLKRIQTIAIYTTLLSGPIPEEIGKCSELQNLYLYQNSISGSIPSQIGELSKLQNLLLWQNNIVGTIPEELGSCTQLEVIDLSENLLTGSIPTSFGKLSILQGLQLSVNKLSGIIPPEITNCTSLIQLEVDNNAISGEIPPLIGNLRRLTLFFAWQNMLTGKIPDSLSQCQDLQALDLSYNNLTGPIPKQLFGLRNLTKLLLLSNDLSGFIPPEIGNCTSLYRLRLNHNRLAGTIPSEITNLKNLNFLDVSSNHLVGEIPSTLSRCQNLEFLDLHSNSLIGSVPDNLPKNLQLIDLSDNRLTGELSHSIGSLTELTKLVLGKNQLGGSIPAEILSCSKLQLLDLGSNSFSGEIPKEVAQIPSLEIFLNLSCNQFSGEIPPQFSSLRKLGVLDLSHNKLSGNLDSLSDLQNLVSLNVSFNDFSGELPNTPFFRKLPLNDLTGNDGLYIVGGVVTPADRKEAKGHARLAMKIIMSILLCTSAVLVLFTIHVLIRAHVANKALNGNNWVITLYQKLEFSIDDIVRNLTSSNVIGTGSSGVVYKVTVPNGQTLAVKKMWSSAESGAFTSEIQALGSIRHKNIIKLQGWGSSKNMKLLFYEYLPNGSLSSLIHGSGKGKAEWETRYDVMLGVAHSLAYLHHDCVPSILHGDVKAMNVLLGPGYQPYLADFGLARIASENGDYTNSKPVQRPYLAGSYGYMAPEHASMQWITEKSDVYSFGVVLLEVLTGRHPLDPTLPGGAHLVQWVRNHLASKGDPHDILDPKLRERTDSTVHEMLQTLAVSFLCVSNRAEDRPTMKDTVAMLKEIRPVEASTTGPDVLKGVSTTVHVSPSPPKNVVSHGTSNCSFNLSEDSIC 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01765 850 SMART LRR_sd22_2 288 314 - -
Pumo9g01765 850 SMART LRR_sd22_2 242 271 - -
Pumo9g01765 850 SMART LRR_sd22_2 26 52 - -
Pumo9g01765 850 SMART LRR_sd22_2 385 410 - -
Pumo9g01765 850 FunFam Putative LRR receptor-like serine/threonine-protein kinase 509 597 - -
Pumo9g01765 850 Gene3D Phosphorylase Kinase; domain 1 492 597 - -
Pumo9g01765 850 Gene3D Ribonuclease Inhibitor 288 365 IPR032675 -
Pumo9g01765 850 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 598 816 - -
Pumo9g01765 850 Gene3D Ribonuclease Inhibitor 366 449 IPR032675 -
Pumo9g01765 850 Gene3D Ribonuclease Inhibitor 1 89 IPR032675 -
Pumo9g01765 850 Gene3D Ribonuclease Inhibitor 90 188 IPR032675 -
Pumo9g01765 850 Gene3D Ribonuclease Inhibitor 189 287 IPR032675 -
Pumo9g01765 850 ProSitePatterns Protein kinases ATP-binding region signature. 530 553 IPR017441 GO:0005524
Pumo9g01765 850 Gene3D Transferase(Phosphotransferase) domain 1 598 813 - -
Pumo9g01765 850 FunFam Putative LRR receptor-like serine/threonine-protein kinase 366 451 - -
Pumo9g01765 850 Pfam Leucine Rich Repeat 290 312 IPR001611 GO:0005515
Pumo9g01765 850 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 156 799 - -
Pumo9g01765 850 ProSiteProfiles Leucine-rich repeat profile. 387 409 IPR001611 GO:0005515
Pumo9g01765 850 PRINTS Leucine-rich repeat signature 173 186 - -
Pumo9g01765 850 PRINTS Leucine-rich repeat signature 385 398 - -
Pumo9g01765 850 SUPERFAMILY L domain-like 288 447 - -
Pumo9g01765 850 ProSiteProfiles Protein kinase domain profile. 524 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g01765 850 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672|GO:0006468
Pumo9g01765 850 SUPERFAMILY Protein kinase-like (PK-like) 512 812 IPR011009 -
Pumo9g01765 850 SUPERFAMILY RNI-like 15 326 - -
Pumo9g01765 850 SMART LRR_typ_2 385 408 IPR003591 -
Pumo9g01765 850 SMART LRR_typ_2 267 290 IPR003591 -
Pumo9g01765 850 SMART LRR_typ_2 50 74 IPR003591 -
Pumo9g01765 850 SMART LRR_typ_2 312 336 IPR003591 -
Pumo9g01765 850 SMART LRR_typ_2 98 122 IPR003591 -
Pumo9g01765 850 SMART LRR_typ_2 194 218 IPR003591 -
Pumo9g01765 850 SMART LRR_typ_2 242 266 IPR003591 -
Pumo9g01765 850 Pfam Leucine rich repeat 76 135 IPR001611 GO:0005515
Pumo9g01765 850 Pfam Protein kinase domain 527 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g01765 850 SMART serkin_6 524 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g01765 850 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 1 93 - -
Pumo9g01765 850 FunFam Leucine-rich receptor-like protein kinase family protein 94 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01765 Pumo-Chr9 46801539 46804191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01765 2 849 Receptor kinase-like Gene Family AT5G56040 67.832 0.0 1157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pumo9g01765 Pkinase 1.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01765 - - gmx:100813139 1556.58