Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01749 ATGACCACTCTGGAGGCTCCCGAGGATGAGAGCATTAAAACTCTCTATGTTGGTGGACTTGATGCTAGGGTCACTGAGCAGGATTTGCGGGATCACTTCTATGCCCTTGGAGAAATCGAATCCATCAAAATGGTTCTCCAACGGGCTTGTGCTTTTGTAACATATACAACCAGAGAAGGTGCAGAAAAGGCATCTGAAGAACTCTCCAACAAACTGGTTATTAAGGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGACATCGAAACCTGAGTCAGATGGCTCTGATCAAGCAAGGCAGCAGGCATCTGTGGCTCATGGTGGATTGTTGCCTCGAGCAGTTATATCACAGCAGCAGAACCAGGACCAAACACAAGGAATGCTTTACTATAACAATCCACCACCTCTTCAGCAGGAAAGAAGCTACTACCCATCAATGGATCCTCAAAGAATGGGTGCTCTTGTTGCATCTCAAGATGGTCCTCCCGGTGGGCCTTCTGGGTCAGGGGAGAACAAGCCCAGTTTGGAGAAGCAGCAAATGCAACATTATGCCCATCCAATGATGCCTCCTCCACCTGGCCAATATCATCATCAATATTATCCTCCATACGGTTATATGCCACCAGTTCCCCCGTATCAACAGTACCCACCTCCATACAATGCTGCTGTGGCTCCATCCCAGCCACCAGCTGCAAATCATCCTTATCAGCATTCTATGCAGCCAGGGTCTTCACAGACAGGGTCTGGACAGGCTGCACATGCCCCAGCTGAATCTGGAACATCAGCATCAGGATCACAGCAGCAATAA 810 0.4926 MTTLEAPEDESIKTLYVGGLDARVTEQDLRDHFYALGEIESIKMVLQRACAFVTYTTREGAEKASEELSNKLVIKGLRLKLMWGRPQTSKPESDGSDQARQQASVAHGGLLPRAVISQQQNQDQTQGMLYYNNPPPLQQERSYYPSMDPQRMGALVASQDGPPGGPSGSGENKPSLEKQQMQHYAHPMMPPPPGQYHHQYYPPYGYMPPVPPYQQYPPPYNAAVAPSQPPAANHPYQHSMQPGSSQTGSGQAAHAPAESGTSASGSQQQ 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01749 269 SMART rrm1_1 14 82 IPR000504 GO:0003723
Pumo9g01749 269 MobiDBLite consensus disorder prediction 119 269 - -
Pumo9g01749 269 MobiDBLite consensus disorder prediction 232 269 - -
Pumo9g01749 269 MobiDBLite consensus disorder prediction 89 103 - -
Pumo9g01749 269 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 162 IPR039171 GO:0003723
Pumo9g01749 269 MobiDBLite consensus disorder prediction 84 104 - -
Pumo9g01749 269 MobiDBLite consensus disorder prediction 186 225 - -
Pumo9g01749 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 86 IPR000504 GO:0003723
Pumo9g01749 269 FunFam Zinc finger CCCH domain-containing protein 40 1 94 - -
Pumo9g01749 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 73 IPR000504 GO:0003723
Pumo9g01749 269 SUPERFAMILY RNA-binding domain, RBD 8 96 IPR035979 GO:0003676
Pumo9g01749 269 CDD RRM_RBM22 12 85 - -
Pumo9g01749 269 Gene3D - 2 95 IPR012677 -
Pumo9g01749 269 MobiDBLite consensus disorder prediction 119 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01749 Pumo-Chr9 46639521 46640330 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01749 5 74 Eukaryotic Initiation Factors Gene Family AT1G49760 34.667 1.11e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01749 K12872 - gmx:100778975 417.157