Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01748 ATGGAGACCTGGTCGAGATGCAAGATCTGTCAGACATGTAGTAAATTGAAAAATGTCTGTCAAGTGTGTCTTCTGGATCTTGAATATGGACTACCAGTTCAAGTCCGAGACACAGCTCTCAATATTGACTCCAATGATGCCATTCCAAAGAGTGATGTTAATAGGGAGTATTTTGCTCAAGAGCATGGCCGCAGGGCTAGAGCTGGTATAGATTATGAATCCTCTTATGGTAAAGTACGCCCAAATGATACTATCATGAAGCTTCAAAGAACAACACCATATTACAAAAGAAACCGGGCGCATATTTGCAGTTTCTACATAAGGGGTGAATGTACCAGAGGAGCTGAGTGCCCTTATAGACATGAGATGCCAGAAACTGGGGAATTGTCTCAACAAAATATTAAAGATCGCTATTATGGGGTGAATGATCCAGTGGCTTGA 441 0.4172 METWSRCKICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALNIDSNDAIPKSDVNREYFAQEHGRRARAGIDYESSYGKVRPNDTIMKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPETGELSQQNIKDRYYGVNDPVA 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01748 146 Pfam Torus domain 78 134 IPR032297 -
Pumo9g01748 146 Gene3D - 87 141 - -
Pumo9g01748 146 ProSiteProfiles Zinc finger C3H1-type profile. 97 124 IPR000571 GO:0046872
Pumo9g01748 146 SMART c3hfinal6 97 123 IPR000571 GO:0046872
Pumo9g01748 146 SUPERFAMILY CCCH zinc finger 99 122 IPR036855 GO:0046872
Pumo9g01748 146 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 8 146 IPR039171 GO:0003723
Pumo9g01748 146 FunFam Zinc finger CCCH domain-containing protein 4 89 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01748 Pumo-Chr9 46638563 46639497 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo9g01748 Torus 3.2e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01748 K12872 - gmx:100778975 288.885