Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01745 ATGCAATCCAAGTCTGAAACTGCAAATCAACTGAGGTCCGATCCACGTTCCTTTACACCTAACAATGTTTATTCTGAACCCTGGTGGCGAGGTATTCAATACAATCCTGTCCCCCAAGCAATGTCAGGAGTGAATGCATCTAATTCATCTTCACTTGAACGCCCTAATGATGATTCAGAATCCAGTGAAGAAGATGATGATGCCACTAAAGAATCACAACCCACTGCTCCTAATCAATCAGGAAATTATGGACAAGACCACCAAGCGATGCAACATTCTTCATCATCTGCACCTTCAGTGCGTGATGATTGCCTCACACAGGCTCCACAACTGGAACTTGTTGGCCATTCAATTGGATATGCTCCTTTTATAGGAATGCCTCATGCCAGAATGGCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTTTATGTGAATGCCAAACAATATCAAGGAATTCTGAGACGAAGACAGGCTCGTGCTAAAGCAGAGCTTGAAAAGAAATTAATAAAAGTCAGAAAGCCATATCTTCACGAATCCCGGCATCAGCATGCTATGAGAAGAGCACGAGGTAATGGAGGACGTTTTGCAAAGAAAACTGAAGTTGAGGCTTCAAACCACATGAACAAGGAAAAGCATATGGGTACCGGCCAAGTCATGTCACAGTCAATTAGTTCATCTGGTTTTGAATCACTACCCTCTGATTCTGCTGAGACCTGGAATTCTCCTAGTGTGCAACAAGATGCAAGAGGATCTCAAGTGCATGAGAGATTTGAAGAACGCAACTATGCAAATGTTTTGCAGTCATCATCTACTTTTTGTTTGCACTCAGGTGAAAGAGTGGAGGAAGGGGACTGTTCAGGTCAGCAACGGGGAAGCATCTCATCTGAGCACACCTCACAGAGGCGTCTTGCTATTCAGTAA 921 0.4408 MQSKSETANQLRSDPRSFTPNNVYSEPWWRGIQYNPVPQAMSGVNASNSSSLERPNDDSESSEEDDDATKESQPTAPNQSGNYGQDHQAMQHSSSSAPSVRDDCLTQAPQLELVGHSIGYAPFIGMPHARMALPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGNGGRFAKKTEVEASNHMNKEKHMGTGQVMSQSISSSGFESLPSDSAETWNSPSVQQDARGSQVHERFEERNYANVLQSSSTFCLHSGERVEEGDCSGQQRGSISSEHTSQRRLAIQ 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01745 306 MobiDBLite consensus disorder prediction 38 55 - -
Pumo9g01745 306 ProSiteProfiles NF-YA/HAP2 family profile. 138 198 IPR001289 GO:0003700|GO:0006355
Pumo9g01745 306 MobiDBLite consensus disorder prediction 209 255 - -
Pumo9g01745 306 PRINTS CCAAT-binding transcription factor subunit B signature 172 195 IPR001289 GO:0003700|GO:0006355
Pumo9g01745 306 PRINTS CCAAT-binding transcription factor subunit B signature 141 163 IPR001289 GO:0003700|GO:0006355
Pumo9g01745 306 MobiDBLite consensus disorder prediction 72 102 - -
Pumo9g01745 306 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 140 195 IPR001289 GO:0003700|GO:0006355
Pumo9g01745 306 SMART cbf3 137 198 IPR001289 GO:0003700|GO:0006355
Pumo9g01745 306 MobiDBLite consensus disorder prediction 1 102 - -
Pumo9g01745 306 ProSitePatterns NF-YA/HAP2 subunit signature. 143 163 IPR018362 GO:0003677|GO:0016602
Pumo9g01745 306 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 22 251 IPR001289 GO:0003700|GO:0006355
Pumo9g01745 306 MobiDBLite consensus disorder prediction 1 28 - -
Pumo9g01745 306 MobiDBLite consensus disorder prediction 210 250 - -
Pumo9g01745 306 MobiDBLite consensus disorder prediction 278 306 - -
Pumo9g01745 306 Gene3D - 138 200 - -
Pumo9g01745 306 MobiDBLite consensus disorder prediction 287 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01745 Pumo-Chr9 46624581 46628589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01745 1 306 CCAAT-HAP2 Transcription Factor Family AT3G20910 43.452 1.07e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pumo9g01745 CBFB_NFYA 1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01745 K08064 - gmx:102664020 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00710 1 10927441 10931856 Pumo9g01745 9 46624581 46628589 PCT