Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01717 ATGCTCCCTCCACGACAGCAGTCACGGGTTGGAGGACTACAAACCTCTCTATCTCTAGTTTCTTCAGATCCCCGCCTTTCTCCTGGGGAGCCTAGATCAAACTCCGACAATCTCCGTGAATCTCCTACTGAAAGTGCCAGTTCTCGAGAGACTTGGCCTACTTCTGACGCAATTGCTGCAAAGAAGATGGAGAATGGAAAAGCAGAGATGGATTGCCCTGATCAGTCAGTTATTCGTCGTGTTTCTAGTGCAGACAAAATTAGTCTTCAGGACATTGCAAGAGAACGAGTTGATATAATATGTGAGAAAATGCATCATCTACCTGACGAATTTCTTGAAGAGCTGAAAAATGGACTTCGAGTTATCCTTGAGGGAGGGAATGGCTCACAGCATAGAGAAGAATTTTTCATTTTGCAGAAGCTTGTTCAGAGTAGATCTGATTTAACAGCCAAGACATTGATAAGAGCACATCGTGTACAGCTTGAAATCCTCGTTGCCATAAATACTGGAATTCAGGCATTTTTACATCCTAGCATCAGTCTATCCCAGACATCGCTGATTGAAATATTTGTGTACAAGAGATGCAGAAACATAGCTTGCCAAAACCAACTTCCTGCTGAAGATTGTACCTGTGAGACATGCGCCAATGGCAATGGTTTCTGCAATCTTTGCATGTGTGTTATCTGCAGCAAGTTTGACTTTGAAGTAAATACATGCCGTTGGATTGGATGTGATTTGTGTTCTCATTGGACTCACACAGACTGTGCCATACGTGAGCAACTTATTTGTATGGGCCCTTCAGCAAAGAATGGAGCAGGGCCAAGTGAAATGGTTTTCAGGTGTCAAGCATGCAACAGGACTTCAGAACTGCAGAACTGCTGGGTTGGGTTAAAGATGTCTTCCAGCATTGTGCACCATCATGGGATGGAGAGGCCTTGA 939 0.4409 MLPPRQQSRVGGLQTSLSLVSSDPRLSPGEPRSNSDNLRESPTESASSRETWPTSDAIAAKKMENGKAEMDCPDQSVIRRVSSADKISLQDIARERVDIICEKMHHLPDEFLEELKNGLRVILEGGNGSQHREEFFILQKLVQSRSDLTAKTLIRAHRVQLEILVAINTGIQAFLHPSISLSQTSLIEIFVYKRCRNIACQNQLPAEDCTCETCANGNGFCNLCMCVICSKFDFEVNTCRWIGCDLCSHWTHTDCAIREQLICMGPSAKNGAGPSEMVFRCQACNRTSELQNCWVGLKMSSSIVHHHGMERP 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01717 312 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 30 290 IPR004082 -
Pumo9g01717 312 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 145 160 IPR004082 -
Pumo9g01717 312 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 186 207 IPR004082 -
Pumo9g01717 312 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 103 125 IPR004082 -
Pumo9g01717 312 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 232 252 IPR004082 -
Pumo9g01717 312 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 160 175 IPR004082 -
Pumo9g01717 312 MobiDBLite consensus disorder prediction 1 54 - -
Pumo9g01717 312 Pfam PHD - plant homeodomain finger protein 195 295 IPR032881 -
Pumo9g01717 312 MobiDBLite consensus disorder prediction 1 55 - -
Pumo9g01717 312 SMART PHD_3 225 285 IPR001965 -
Pumo9g01717 312 CDD PHD_OBE1_like 225 284 IPR047578 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01717 Pumo-Chr9 46274845 46275783 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01717 195 294 PHD Gene Family AT5G57380 29.000 2.88e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01717 - - gmx:100795450 582.793