Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01713 ATGTCCTACTTCTGTTTACTATGGAGGAGTCAAAAGCAGAAGCTAGTTCAGGGGCATCCAGCTGCACAACAAAAGCGGTTGAAACATTTTCCAAGGGGTCCTTCAAGGGGTGCTGGGAGGTGGAGGAAAAAGTTACTAGTTTTATTTGTGTCACTTGGAATAATTGGGTCCTTTTGGTTATTTTGGCACCTGAATACGGGCATTATGCAGAGAAGAGAAGAAACGCTAGCAAATATGTGTGATGAGAGAGCCCGTATGCTGCAAGATCAGTTTAATGTGAGCATGAACCATGTTCATGCTCTGGCTATCCTTGTATCTACCTTTCACCATGGTAAACATCCTTCTGCAATGGACCAGAAAATTTTTGGAGAATATACAGAGAGTACAGCATTTGAAAGACCACTTACTAGTGGTGTTGCTTATGCTTTGAAAGTTCTCCACTCTGATAGGATGCATTTTGAGAAGCAGCAAGGGTGGACAATTAAGAAAATGGAAACTGAGAATGAGGCATTAGTCCAAGATTGTATTCCAGAAAATTTGGATCCAGCACCTATTCAAGATGAATATGCACCAGTGATATTTGCTCAAGAAACAGTTTCCCATATTGTATCTATTGACATGATGTCAGGGAAGGAGGACCGGGAGAATATTTTGCGAGCAAGGGCGTCTGGAAAGGGGGTTCTGACATCCCCTTTTAAACTACTAAAGTCCAATCACCTGGGTGTTGTACTTACATTTGCTGTCTATAACACTAATCTTCCTTTAGATGCTACACTGGAGCAGCGTATTGAAGCTACCGTGGGGTATCTGGGTGCATCTTATGATGTTCCATCACTGGTGGACAAGCTTCTGCACCAACTTGCCAGTAAACAAACCATTGTTGTAAATGTTTATGACACAACTAATGCATCTGCACCAATCACAATGTATGGTACTGATGTTGCTGACACTGGCTTACTACACATAAGCAGCCTAGATTTTGGGGATCCGCTACGAAAACATGAGATGCACTGCAGGTTCAAGCAGAGGCCTCCATTACCTTGGACAGCAATCAATGCATCAGTGGGGGTGCTTGTTATTACTTTGCTTCTGGGTCATATTTTTTATGCAGCAATAAATAGAATAGCAAAAGTTGAGGATGACTATCGTCAAATGGAAGAGCTGAAAGTTCGTGCTGAAGCTGCAGATGTGGCAAAATCTCAGTTTCTTGCGACAGTTTCACACGAGATCAGGACTCCAATGAATGGTGTTTTAGGTATGCTGCAAATGTTAATGGATACTGAGCTTGATGAAAACCAGATGGACTGTGCCCAAACCGCCCACAAGAGTGGTAAAGATCTTATCTCAGTCATAAGCGAGGTTCTCGATCAGGCTAAGATTGAGGCAGGAAAGCTTGAACTTGAAGCTGTAGCCTTTGATCCACGAGCTATTCTTGATGAAGTTTTATCACTTTTCTCTGAAAAATCTAATGAAAAAGGAATAGAGCTTGCTGTTTATGCATCCAATCAAGTACCTAAAGTTGTCATTGGCGATCCTAAACGGTTCCGGCAAATAATTACTAATCTTGTTGGCAATTCACTCAAGTTCACTCATGATAAAGGACATGTATTTGTCTCTGTTCATCTGGCGAATGAAGTGAAGAACCCACTTCATATTGTGGACGTAGTGCTGAGAGAAGGCTTAAACTTGAACCAGGACATATCAAACAGAACATATGATACGTTAAGCGGGTTTCCTGTATGCAACAGGTGGAAAAGTTGGGCAAATTTTAAGAAGTTAAGTGGCACAAATGGGCCTGAAATTATTCAACTTCTAGTAATAGTTGAGGACACAGGTATAGGAATTCCTACAGATGCACAAAGCCGCATATTCAGACCTTTTATGCAGGCTGACAGTTCCACCTCCCGAACATATGGTGGAACTGGAATAGGACTGAGCATTAGTAAATGTCTAGTTGACCTCATGAGAGGAGAAATTGGATTTGTAAGTGAGCCTGGAATTGGAAGTACTTTTTCCTTTACCGGAACTTTCAGAAAAGGAGAAAGCACGTCTCTGGATGCAATGCGGCAGAATAATCATTTTGGTTCAGAGTTCCAAGGATTGAGAGCATTAGTGGTAGATAGAAGAAAAATCCGAGCTGAGGTCACAAGATATCATCTGCAGAGATTGGGAATGTCCGTGGATGTAGCTCACAGTCTGAATTCTGCATGCTCTTGTCTATCTAATATGTGTAACATGAGTATGTCAACCCAGTTGGCCGTGATTCTTATAGACAAGGATGCTTGGGATAAAGAATGTCATATCTTATACACAATCAAGAAACATAGACAGAATAGCATCAAAGGGGATCCAATGAACTTACCAAAGATTTTTCTCCTGGCCACCCACCTTAGCTCCAATGAACAGGATGAACTCAAGTCAGTTGGTATCATAGATGATATACTAATGAAGCCTCTTTGGCTTAGTTCTTTGATTCAGTCTTACAGAGAATCCCTTGGCACTGAAAAAAAGCGAGTAAATAGGAAAAAAGTATCCAAACTCGGGAATTTATTAATGCACAAACAAATTTTGGTGGTTGATGATAATGCAGTGAACAGAAGAGTTGCAAAAGGTGTTCTACAGAAATATGGGGCAAAAGTTACTGCTGTGGAGAGTGGCAGGGCTGCTCTAAAGATGCTTAGACTGCCGCATAATTTTGATGCTTGTTTCATGGATCTCCAAATGCCAGAAATGGATGGTTTTGAAGCGACAAGGCAAATCCGTTGTCTGGAGAGTGAGGTAAATGACAAAATTGCGTGTGGGCAAGCATCTGCAGAGATGTTTTGTAACATCTCTTATTGGCACATTCCAATACTAGCAATGACAGCAGATTCAACTCAGTCTTCCAATGAAGAGTGCATAAAGTGTGGAATGGATGACTATGTGTCAAAGCCATTTGAAGAAGAGCAGCTCTACATGGCAATGGCACGTTTCTTCAAGTCAGATTCATAG 2991 0.4142 MSYFCLLWRSQKQKLVQGHPAAQQKRLKHFPRGPSRGAGRWRKKLLVLFVSLGIIGSFWLFWHLNTGIMQRREETLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAMDQKIFGEYTESTAFERPLTSGVAYALKVLHSDRMHFEKQQGWTIKKMETENEALVQDCIPENLDPAPIQDEYAPVIFAQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTNLPLDATLEQRIEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTNASAPITMYGTDVADTGLLHISSLDFGDPLRKHEMHCRFKQRPPLPWTAINASVGVLVITLLLGHIFYAAINRIAKVEDDYRQMEELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDENQMDCAQTAHKSGKDLISVISEVLDQAKIEAGKLELEAVAFDPRAILDEVLSLFSEKSNEKGIELAVYASNQVPKVVIGDPKRFRQIITNLVGNSLKFTHDKGHVFVSVHLANEVKNPLHIVDVVLREGLNLNQDISNRTYDTLSGFPVCNRWKSWANFKKLSGTNGPEIIQLLVIVEDTGIGIPTDAQSRIFRPFMQADSSTSRTYGGTGIGLSISKCLVDLMRGEIGFVSEPGIGSTFSFTGTFRKGESTSLDAMRQNNHFGSEFQGLRALVVDRRKIRAEVTRYHLQRLGMSVDVAHSLNSACSCLSNMCNMSMSTQLAVILIDKDAWDKECHILYTIKKHRQNSIKGDPMNLPKIFLLATHLSSNEQDELKSVGIIDDILMKPLWLSSLIQSYRESLGTEKKRVNRKKVSKLGNLLMHKQILVVDDNAVNRRVAKGVLQKYGAKVTAVESGRAALKMLRLPHNFDACFMDLQMPEMDGFEATRQIRCLESEVNDKIACGQASAEMFCNISYWHIPILAMTADSTQSSNEECIKCGMDDYVSKPFEEEQLYMAMARFFKSDS 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01713 996 Coils Coil 375 395 - -
Pumo9g01713 996 ProSiteProfiles Response regulatory domain profile. 702 832 IPR001789 GO:0000160
Pumo9g01713 996 ProSiteProfiles CHASE domain profile. 113 337 IPR006189 -
Pumo9g01713 996 FunFam Histidine kinase 4 370 461 - -
Pumo9g01713 996 SMART HKATPase_4 510 679 IPR003594 -
Pumo9g01713 996 Pfam His Kinase A (phospho-acceptor) domain 398 463 IPR003661 GO:0000155|GO:0007165
Pumo9g01713 996 Gene3D - 369 461 - -
Pumo9g01713 996 ProSiteProfiles Response regulatory domain profile. 855 992 IPR001789 GO:0000160
Pumo9g01713 996 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 510 674 IPR003594 -
Pumo9g01713 996 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 453 674 IPR036890 -
Pumo9g01713 996 SMART CHASE_2 113 312 IPR006189 -
Pumo9g01713 996 Gene3D - 695 837 - -
Pumo9g01713 996 Gene3D - 850 995 - -
Pumo9g01713 996 SMART HisKA_10 398 463 IPR003661 GO:0000155|GO:0007165
Pumo9g01713 996 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 384 464 IPR036097 GO:0000155|GO:0007165
Pumo9g01713 996 PRINTS Bacterial sensor protein C-terminal signature 604 618 IPR004358 GO:0016310|GO:0016772
Pumo9g01713 996 PRINTS Bacterial sensor protein C-terminal signature 639 657 IPR004358 GO:0016310|GO:0016772
Pumo9g01713 996 PRINTS Bacterial sensor protein C-terminal signature 663 676 IPR004358 GO:0016310|GO:0016772
Pumo9g01713 996 PRINTS Bacterial sensor protein C-terminal signature 622 632 IPR004358 GO:0016310|GO:0016772
Pumo9g01713 996 CDD HATPase_EvgS-ArcB-TorS-like 515 674 - -
Pumo9g01713 996 CDD HisKA 398 459 IPR003661 GO:0000155|GO:0007165
Pumo9g01713 996 FunFam Histidine kinase 4 117 344 - -
Pumo9g01713 996 SUPERFAMILY CheY-like 697 831 IPR011006 -
Pumo9g01713 996 CDD REC_hyHK_CKI1_RcsC-like 856 988 - -
Pumo9g01713 996 SUPERFAMILY CheY-like 854 992 IPR011006 -
Pumo9g01713 996 Gene3D CHASE domain 117 344 IPR042240 -
Pumo9g01713 996 Pfam Response regulator receiver domain 856 987 IPR001789 GO:0000160
Pumo9g01713 996 Gene3D - 462 680 IPR036890 -
Pumo9g01713 996 Gene3D - 64 116 - -
Pumo9g01713 996 SMART REC_2 854 988 IPR001789 GO:0000160
Pumo9g01713 996 Pfam CHASE domain 116 310 IPR006189 -
Pumo9g01713 996 ProSiteProfiles Histidine kinase domain profile. 405 679 IPR005467 -
Pumo9g01713 996 PANTHER TWO-COMPONENT HISTIDINE KINASE 64 985 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01713 Pumo-Chr9 46241193 46248743 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01713 9 993 Miscellaneous Gene Families AT5G35750 67.206 0.0 1345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo9g01713 CHASE 2.7e-33 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01713 K14489 - gmx:100805107 1892.86