Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo9g01707 | ATGCAATCAGATAATGGCAAGTTATTTATCGGTGGGATATCATGGGACACAAATGAAGAGCGACTCAGGGAGTATTTCAGTACTTATGGAGAGGTTGTGGAAGCAGTGATAATGAAGGATCGGACAACAGGTAGAGCCAGAGGATTTGGGTTCGTTGTTTTTTCCGACCCAGCTGTTGCAGAAATAGTCATAAAAGAGAAGCACAACATTGACGGAAGGATGGTTGAGGCGAAGAAAGCTGTTCCTAGGGATGATCAGAACATACTGAGTAGAAACAGTGGCAGCATCCATGGTTCTCCTGGTCCAGGTCGCACTAGAAAGATATTTGTTGGAGGTTTAGCATCAACAGTGACAGAGAGTGATTTCAAGAAGTACTTTGATCAGTTTGGGACTATAACAGATGTTGTAGTTATGTATGATCACAACACTCAGAGGCCAAGAGGTTTTGGATTTATCACTTATGATTCTGAGGAGGCAGTTGACAAGGTCTTACTTAAGACGTTTCATGAATTGAATGGTAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAGTTATCGCCAGGACCAAGCCGCACCCCACTTGGTGGATATAACTATGGTCTTAGTAGGGTCAATAGTTTCTTAAATGGCTTCACTCAGGGGTATACTCCAAGTACTGTTGGAGGCTATGGACTTCGAGCAGATGGTAGATTCAGTCCCGTTGCCAGTGGTCGAAGTGGATTTGCTCCATTTGGATCAGGTTATGGAATGAGCATGAATTTTGAGCCTGGTTTGAATGCTGGATTTGGGGGGAATGCAAATTTCAATAGCAATCTTAGCTATGATCGGGGAGTAAATCCTTATTTTATTGGCAGCTCCAATAGGTTTGGCAGTCCTGTTGGATATGACAGTGGAAATGGAGGAAACAATTCTTTCTTCAGTTCTGTGACTCGAAATTTGTGGGGTAATGGTGGCCTTAGTTATGGAACAAGTTCTGCAAATTCCAATGCATACATTGGATCAGGGAGTGGGACTGTTGGAGGGAACACATTTGGCAACACTGGAGTCAACTGGGGTTCTTCAGCAATTTCTGGGCAGCAGGGAGGAGGGAACAATATGTCACAAAGTAGTGGCAACCTGGGATATGGAGGTGGTGACAACAATTATGGTTTGGGGACTGGAGGGTATGGAAGGAGCACTGGTGCCACTTTTGCACCAACATCTTCATACTCTGCATCAAATGGTGGTGTTGATGGGGCTTTTGCAGACTTTTACAATAATAATAGTTCAGTTTATGGGGACCCCACTTGGCGATCTTCAAATTCTGAGAGAGAAGGATCTGGTCCCTTTGGTTATGGACTTGGTGGCGCAGCTTCAGATGTTTCTGCCAAGAGTTCTCCTGGTTATGTTGGTGGTTACACTGTTAATAAGAGGCAGCCAAATAGGGGTAAGAGTTACAATAATTTAGACGAATGCCCTTTTCTAGATGCTAGGCATTTTGAGGAAATGTTATCTGATTGA | 1503 | 0.4385 | MQSDNGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAEIVIKEKHNIDGRMVEAKKAVPRDDQNILSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRTPLGGYNYGLSRVNSFLNGFTQGYTPSTVGGYGLRADGRFSPVASGRSGFAPFGSGYGMSMNFEPGLNAGFGGNANFNSNLSYDRGVNPYFIGSSNRFGSPVGYDSGNGGNNSFFSSVTRNLWGNGGLSYGTSSANSNAYIGSGSGTVGGNTFGNTGVNWGSSAISGQQGGGNNMSQSSGNLGYGGGDNNYGLGTGGYGRSTGATFAPTSSYSASNGGVDGAFADFYNNNSSVYGDPTWRSSNSEREGSGPFGYGLGGAASDVSAKSSPGYVGGYTVNKRQPNRGKSYNNLDECPFLDARHFEEMLSD | 500 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo9g01707 | 500 | Gene3D | - | 103 | 189 | IPR012677 | - | |
Pumo9g01707 | 500 | CDD | RRM1_hnRNPA_hnRNPD_like | 8 | 78 | - | - | |
Pumo9g01707 | 500 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 104 | IPR035979 | GO:0003676 | |
Pumo9g01707 | 500 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 6 | 82 | IPR000504 | GO:0003723 | |
Pumo9g01707 | 500 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 108 | 165 | IPR000504 | GO:0003723 | |
Pumo9g01707 | 500 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8 | 69 | IPR000504 | GO:0003723 | |
Pumo9g01707 | 500 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 5 | 87 | - | - | |
Pumo9g01707 | 500 | SUPERFAMILY | RNA-binding domain, RBD | 105 | 193 | IPR035979 | GO:0003676 | |
Pumo9g01707 | 500 | PANTHER | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 | 1 | 476 | - | - | |
Pumo9g01707 | 500 | CDD | RRM2_Hrp1p | 107 | 184 | - | - | |
Pumo9g01707 | 500 | SMART | rrm1_1 | 7 | 78 | IPR000504 | GO:0003723 | |
Pumo9g01707 | 500 | SMART | rrm1_1 | 107 | 179 | IPR000504 | GO:0003723 | |
Pumo9g01707 | 500 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 106 | 183 | IPR000504 | GO:0003723 | |
Pumo9g01707 | 500 | Gene3D | - | 4 | 88 | IPR012677 | - | |
Pumo9g01707 | 500 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 103 | 190 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo9g01707 | Pumo-Chr9 | 46188740 | 46191666 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo9g01707 | 8 | 185 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 32.620 | 1.16e-14 | 74.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo9g01707 | K14411 | - | gmx:100795907 | 858.981 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pumo9g01707 | 9 | 46188740 | 46191666 | Pumo9g01707 | 9 | 46188740 | 46191666 | ECH |