Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01707 ATGCAATCAGATAATGGCAAGTTATTTATCGGTGGGATATCATGGGACACAAATGAAGAGCGACTCAGGGAGTATTTCAGTACTTATGGAGAGGTTGTGGAAGCAGTGATAATGAAGGATCGGACAACAGGTAGAGCCAGAGGATTTGGGTTCGTTGTTTTTTCCGACCCAGCTGTTGCAGAAATAGTCATAAAAGAGAAGCACAACATTGACGGAAGGATGGTTGAGGCGAAGAAAGCTGTTCCTAGGGATGATCAGAACATACTGAGTAGAAACAGTGGCAGCATCCATGGTTCTCCTGGTCCAGGTCGCACTAGAAAGATATTTGTTGGAGGTTTAGCATCAACAGTGACAGAGAGTGATTTCAAGAAGTACTTTGATCAGTTTGGGACTATAACAGATGTTGTAGTTATGTATGATCACAACACTCAGAGGCCAAGAGGTTTTGGATTTATCACTTATGATTCTGAGGAGGCAGTTGACAAGGTCTTACTTAAGACGTTTCATGAATTGAATGGTAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAGTTATCGCCAGGACCAAGCCGCACCCCACTTGGTGGATATAACTATGGTCTTAGTAGGGTCAATAGTTTCTTAAATGGCTTCACTCAGGGGTATACTCCAAGTACTGTTGGAGGCTATGGACTTCGAGCAGATGGTAGATTCAGTCCCGTTGCCAGTGGTCGAAGTGGATTTGCTCCATTTGGATCAGGTTATGGAATGAGCATGAATTTTGAGCCTGGTTTGAATGCTGGATTTGGGGGGAATGCAAATTTCAATAGCAATCTTAGCTATGATCGGGGAGTAAATCCTTATTTTATTGGCAGCTCCAATAGGTTTGGCAGTCCTGTTGGATATGACAGTGGAAATGGAGGAAACAATTCTTTCTTCAGTTCTGTGACTCGAAATTTGTGGGGTAATGGTGGCCTTAGTTATGGAACAAGTTCTGCAAATTCCAATGCATACATTGGATCAGGGAGTGGGACTGTTGGAGGGAACACATTTGGCAACACTGGAGTCAACTGGGGTTCTTCAGCAATTTCTGGGCAGCAGGGAGGAGGGAACAATATGTCACAAAGTAGTGGCAACCTGGGATATGGAGGTGGTGACAACAATTATGGTTTGGGGACTGGAGGGTATGGAAGGAGCACTGGTGCCACTTTTGCACCAACATCTTCATACTCTGCATCAAATGGTGGTGTTGATGGGGCTTTTGCAGACTTTTACAATAATAATAGTTCAGTTTATGGGGACCCCACTTGGCGATCTTCAAATTCTGAGAGAGAAGGATCTGGTCCCTTTGGTTATGGACTTGGTGGCGCAGCTTCAGATGTTTCTGCCAAGAGTTCTCCTGGTTATGTTGGTGGTTACACTGTTAATAAGAGGCAGCCAAATAGGGGTAAGAGTTACAATAATTTAGACGAATGCCCTTTTCTAGATGCTAGGCATTTTGAGGAAATGTTATCTGATTGA 1503 0.4385 MQSDNGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAEIVIKEKHNIDGRMVEAKKAVPRDDQNILSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRTPLGGYNYGLSRVNSFLNGFTQGYTPSTVGGYGLRADGRFSPVASGRSGFAPFGSGYGMSMNFEPGLNAGFGGNANFNSNLSYDRGVNPYFIGSSNRFGSPVGYDSGNGGNNSFFSSVTRNLWGNGGLSYGTSSANSNAYIGSGSGTVGGNTFGNTGVNWGSSAISGQQGGGNNMSQSSGNLGYGGGDNNYGLGTGGYGRSTGATFAPTSSYSASNGGVDGAFADFYNNNSSVYGDPTWRSSNSEREGSGPFGYGLGGAASDVSAKSSPGYVGGYTVNKRQPNRGKSYNNLDECPFLDARHFEEMLSD 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01707 500 Gene3D - 103 189 IPR012677 -
Pumo9g01707 500 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Pumo9g01707 500 SUPERFAMILY RNA-binding domain, RBD 3 104 IPR035979 GO:0003676
Pumo9g01707 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Pumo9g01707 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Pumo9g01707 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Pumo9g01707 500 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Pumo9g01707 500 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Pumo9g01707 500 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 476 - -
Pumo9g01707 500 CDD RRM2_Hrp1p 107 184 - -
Pumo9g01707 500 SMART rrm1_1 7 78 IPR000504 GO:0003723
Pumo9g01707 500 SMART rrm1_1 107 179 IPR000504 GO:0003723
Pumo9g01707 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Pumo9g01707 500 Gene3D - 4 88 IPR012677 -
Pumo9g01707 500 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01707 Pumo-Chr9 46188740 46191666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01707 8 185 Eukaryotic Initiation Factors Gene Family AT2G36660 32.620 1.16e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01707 K14411 - gmx:100795907 858.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01707 9 46188740 46191666 Pumo9g01707 9 46188740 46191666 ECH