Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01678 ATGGAGTGTCGGCAGTGGGGTGCTCATTTGCCTCATGTTGCGGGCATTGCTGGACAGAGTGGTTATGGTGCCCAGTCTGTTGCCCTTTCTGGTGGATACGAGGATGACGAGGACCATGGTGAGTGGTTCCTTTACACTGGCAGTGGTGGGAGAGATCTAAGTGGTAACAAACGCACAAATAAGCTTCAATCCTTTGACCAAAAGTTTGAAAACATGAACGAGGCCTTGAGAGTAAGCTGCCGGAAGGGTTATCCTGTTCGGGTTGTAAGGTCACACAAGGAAAAACGTTCTTCTTATGCACCAGAATCTGGAGTGCGATATGATGGGGTTTATAGAATAGAGAAATGCTGGCGCAAAAATGGAATACAAGGTTGCAAGGTTTGCAGGTATTTGTTTGTGAGATGTGACAACGAGCCAGCACCGTGGACAAGTGATGAAATTGGAGATCGCCCACGCCCACTGCCTAAAATTGATGAGTTGAAGGGTGCAATTGATATAACTGAAAGGAAGGGTGATCCATCATGGGATTATGATGAGGAAAAGGGGTGCTGGTTGTGGAAGAAGCCTCCACCAGAAAGCAAGAAATCAGTGGACATTAAATCTGAAGATGGAACAACAGTCAGAGTTAAACGAAAAGCAAAGAATGTGTCCGTGAAAGAAAGGCTATTGAAAGAGTTTGGTTGCCAAATATGTCGCAAGGTGATGGCTTTCCCTCTTACTACACCTTGTGCTCACAACTTCTGCAAAGCCTGTTTGGAGGGTGCCTTTTCTGGCCAAAGTTTTATCAGAAATAGGGCATGTGGAGGTGGACGCACTTTACGAGCACAGAAGAATGTTATGAAATGCCCATCATGTTCAAATGACATTGCTGACTTTCTTCAGAATCCACAGGTTAATAGAGAAATGCTGGCTGTTATAGAATCATTACAATGCCAGGCTGAAGATGAAAATTCTGAAGAGTTAAGTGATAAAAATGATGAAAATCTGCATGACACAACAGAGGTTTCGAAACCTTGCGATTCTAGTGATAAAGTCCTTGAGGAAATTAAGGACAATGATCTGAATCAGCCACACAAGCGAAGAAAAGAGTGA 1092 0.4396 MECRQWGAHLPHVAGIAGQSGYGAQSVALSGGYEDDEDHGEWFLYTGSGGRDLSGNKRTNKLQSFDQKFENMNEALRVSCRKGYPVRVVRSHKEKRSSYAPESGVRYDGVYRIEKCWRKNGIQGCKVCRYLFVRCDNEPAPWTSDEIGDRPRPLPKIDELKGAIDITERKGDPSWDYDEEKGCWLWKKPPPESKKSVDIKSEDGTTVRVKRKAKNVSVKERLLKEFGCQICRKVMAFPLTTPCAHNFCKACLEGAFSGQSFIRNRACGGGRTLRAQKNVMKCPSCSNDIADFLQNPQVNREMLAVIESLQCQAEDENSEELSDKNDENLHDTTEVSKPCDSSDKVLEEIKDNDLNQPHKRRKE 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01678 363 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 1 323 IPR045134 -
Pumo9g01678 363 ProSiteProfiles Zinc finger RING-type profile. 228 286 IPR001841 -
Pumo9g01678 363 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 1 152 - -
Pumo9g01678 363 Gene3D - 1 171 IPR036987 -
Pumo9g01678 363 Pfam SAD/SRA domain 1 137 IPR003105 -
Pumo9g01678 363 ProSitePatterns Zinc finger RING-type signature. 243 252 IPR017907 -
Pumo9g01678 363 Coils Coil 299 319 - -
Pumo9g01678 363 Pfam RING-type zinc-finger 228 283 IPR027370 -
Pumo9g01678 363 SMART G9a_1 1 138 IPR003105 -
Pumo9g01678 363 MobiDBLite consensus disorder prediction 323 363 - -
Pumo9g01678 363 SUPERFAMILY PUA domain-like 1 168 IPR015947 -
Pumo9g01678 363 SUPERFAMILY RING/U-box 220 310 - -
Pumo9g01678 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 213 338 IPR013083 -
Pumo9g01678 363 SMART ring_2 228 285 IPR001841 -
Pumo9g01678 363 ProSiteProfiles YDG domain profile. 1 134 IPR003105 -
Pumo9g01678 363 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 214 330 - -
Pumo9g01678 363 MobiDBLite consensus disorder prediction 316 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01678 Pumo-Chr9 45900220 45902369 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01678 2 318 C2H2 Transcription Factor Family AT5G39550 66.667 2.41e-155 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01678 K10638 - gmx:100786796 737.258