Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01677 ATGGCGCAGCTTCCGTGCGACTCCGACGGCGTCTGCATGCTTTGCAAACAGAAACCCACTCCTTCCGAAACTCTCTCCTGTCGAACGTGTGCCACTCCCTGGCACCTTTCCTGTCTCCCTTCGCCCCCTCTCTCCCTCTCCGACTCACATTGGGACTGTCCCGACTGTTCTGACATCTCCAACCATGAACATGAACATGAACCCGTCGCTCCCACCGGAGACAACCTTGTCTCCGCTATCCATGCCATTCAGGCCGACCCTTCTCTCACTGACCAACAAAAGGCCAAAAAGCGCCAAGAACTCCTCGCCGGCTCAACAGACCCCTCCAATGATAAAACCAAAACTAAAGATATTTTTGATGGAAGCTTAAATTGCTCCATATGCATGCAACTGCCAGACAGACCCGTCACGACGCCCTGTGGACACAACTTCTGCTTGAGATGTTTCGAGAAGTGTATTGGACAGGGGAAGCGCACTTGCGCCAATTGCCGTGCTCAAATCCCAGCAAAGATGGCGAGTCAGCCGAGAATCAACTCTCAGTTAGCCATGGCCATTCGATTGGCGAAGGTGGCCAAGTCAGGAGGGTCTTCGGGCCCACCCAAGGTATATCACTTTGTTCGTAATCAGGATCGTCCTGACACTGCTTTCACCACAGAGCGAGCAAAGAAGACTGGAAAGGCCAATGCTTGCAGTGGTAAGATCTTTGTGACTGTTCCTCCTGATCATTTTGGGTCCCATCCCTGCTGA 747 0.5274 MAQLPCDSDGVCMLCKQKPTPSETLSCRTCATPWHLSCLPSPPLSLSDSHWDCPDCSDISNHEHEHEPVAPTGDNLVSAIHAIQADPSLTDQQKAKKRQELLAGSTDPSNDKTKTKDIFDGSLNCSICMQLPDRPVTTPCGHNFCLRCFEKCIGQGKRTCANCRAQIPAKMASQPRINSQLAMAIRLAKVAKSGGSSGPPKVYHFVRNQDRPDTAFTTERAKKTGKANACSGKIFVTVPPDHFGSHPC 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01677 248 ProSitePatterns Zinc finger PHD-type signature. 12 56 IPR019786 -
Pumo9g01677 248 SUPERFAMILY RING/U-box 118 171 - -
Pumo9g01677 248 SMART PHD_3 11 57 IPR001965 -
Pumo9g01677 248 ProSiteProfiles Zinc finger RING-type profile. 125 164 IPR001841 -
Pumo9g01677 248 SMART ring_2 12 56 IPR001841 -
Pumo9g01677 248 SMART ring_2 125 163 IPR001841 -
Pumo9g01677 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 191 IPR013083 -
Pumo9g01677 248 ProSiteProfiles Zinc finger PHD-type profile. 9 59 IPR019787 -
Pumo9g01677 248 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 2 247 IPR045134 -
Pumo9g01677 248 Pfam Zinc finger, C3HC4 type (RING finger) 123 168 - -
Pumo9g01677 248 MobiDBLite consensus disorder prediction 85 114 - -
Pumo9g01677 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 75 IPR013083 -
Pumo9g01677 248 CDD RING-HC_ORTHRUS_rpt1 122 168 IPR047498 -
Pumo9g01677 248 SUPERFAMILY FYVE/PHD zinc finger 5 58 IPR011011 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01677 3 247 C2H2 Transcription Factor Family AT5G39550 54.118 2.57e-87 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01677 K10638 - gmx:100786796 432.565