Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01670 ATGGAGATGCAACAACTCCTCAGTATGGGCTTCCCGGACGAGTTAGCCGCCCAAGCTTTGGCTGCCACCGGCGGCAAATCCACCATCAAAGCCACTGAATGGATTCTCACTCACAAATCCAACTCTAATCCCCCTTCCACTTCCACCTCCACTTCCGCATTTCAGCCCAAGCTCGATCGTTTCTTCCATTCCCAATCACAATCACAATCACAATCACAAGAAGACGACGAACCCTCCAAACGCCCCAAACCTTCTCCTACTCAACCACCACAACAAAACTGGCCCTCTTTCTTCTTCAAGACCCCAGACAAGAAACACGCCAACACTCACATTCACATTCACGAACCCTTGTACGAGCGGTTGCGTCCCAGAACCCTCGTCGACGTCGTAGGTCAGGAGCATCTCCTCGCCCCCAACTCCCTTCTTCGCTCCGCAATCCAACGCAATCGCCTCCCCTCCATCCTCTTGTGGGGCCCACCTGGCACCGGTAAGACCACTATCGCCAAAGCCATCGTTAACTCCACAACTTCAAACTGTTACCGCTTTGTCTCCTTATCTGCCGTCACTAGCGGTGTTAAAGACGTCAGGGACGCCGTTGACGAGGCCAGAAAACTCAGACTTAAATCCAACCAAACCACCGTTCTCTTCGTCGACGAGGTTCACAGGTTCAACAAGTCCCAACAGGACTCTTTCTTACCCGTCATTGAAGATGGCAGCATTGTCTTCGTTGGGGCCACCACCGAGAACCCTTCTTTCCATTTGATCACGCCTCTCTTGTCTCGTTGCCGTCTCCTCACCCTTAACCCTCTCCAACCCCACCACCTTGCCTTGCTTCTAAACCGTGCTGTCACTGACACTGACAAAGGGTTGATGCAAACCGTGGGGGTTCAGGTTCATGTGAACGAGGATGTTGTTGATTTTATTGGCAACAATTGTGATGGGGATGCTAGGGTGGCCTTGAATGCCTTGGACATTGCAGCTGTTACCGCAGCTGCACGGCTACAACATGGGATGGAGTTGGATCTTCACACAAACGAGGAATGCAAGGTTGCTCCTGCTGTTGTTACTGTTGATGATGCAAAGGAGGCACTTCAGTGCAAGCATCTTGCTTATGATAAGGCTGGGGAAGAGCACTATAATCTAATCAGTGCGTTGCACAAGTCTATGAGGGGAAGCGATGCCAATGCAGCCATTTATTGGTTGGCAAGAATGTTAGAGGGAGGTGAAGAGCCTCTTTACATTGCTCGCAGACTCATACGGTTTGCAAGTGAGGATGTTGGTTTGGCTGATCCATCAGCTCTTAATCAGGCCGTCTCTTGCTACCAAGCTTGCCACTTCATAGGAATGCCCGAATGCAATGTCATTCTTGCACAGTGTGTTGCTTACTTGGCCTTGGCACCCAAATCTATTGCAGTTTATCGAGCAATAGGAGCCGCTCAGAAGGCAGTAAGGGAATCGGCTGGACAGAATGAGGGGGTGCCTCTCCATTTGAGGAATGCTCCAACCAAATTAATGAAGGACATTGGGTATGGGAAGGGATACATCTACACTCCCGACAATCCCACCGCAACACAAACCTACTTGCCACCATCACTTCAAGGCCACAAGTTCCTCGATTGGCCTGACAGGATTCCCTCTGATGGATAA 1647 0.507 MEMQQLLSMGFPDELAAQALAATGGKSTIKATEWILTHKSNSNPPSTSTSTSAFQPKLDRFFHSQSQSQSQSQEDDEPSKRPKPSPTQPPQQNWPSFFFKTPDKKHANTHIHIHEPLYERLRPRTLVDVVGQEHLLAPNSLLRSAIQRNRLPSILLWGPPGTGKTTIAKAIVNSTTSNCYRFVSLSAVTSGVKDVRDAVDEARKLRLKSNQTTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRLLTLNPLQPHHLALLLNRAVTDTDKGLMQTVGVQVHVNEDVVDFIGNNCDGDARVALNALDIAAVTAAARLQHGMELDLHTNEECKVAPAVVTVDDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDANAAIYWLARMLEGGEEPLYIARRLIRFASEDVGLADPSALNQAVSCYQACHFIGMPECNVILAQCVAYLALAPKSIAVYRAIGAAQKAVRESAGQNEGVPLHLRNAPTKLMKDIGYGKGYIYTPDNPTATQTYLPPSLQGHKFLDWPDRIPSDG 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01670 548 Gene3D - 105 268 IPR027417 -
Pumo9g01670 548 FunFam Putative AAA family ATPase 365 468 - -
Pumo9g01670 548 Pfam AAA C-terminal domain 297 390 IPR032423 -
Pumo9g01670 548 Gene3D - 2 52 - -
Pumo9g01670 548 Pfam MgsA AAA+ ATPase C terminal 391 539 IPR021886 -
Pumo9g01670 548 Pfam UBA/TS-N domain 4 35 IPR015940 -
Pumo9g01670 548 Gene3D - 469 544 - -
Pumo9g01670 548 FunFam Replication-associated recombination protein A 106 269 - -
Pumo9g01670 548 Pfam ATPase family associated with various cellular activities (AAA) 154 263 IPR003959 GO:0005524|GO:0016887
Pumo9g01670 548 CDD AAA 130 264 - -
Pumo9g01670 548 SUPERFAMILY post-AAA+ oligomerization domain-like 375 541 IPR008921 GO:0003677|GO:0006260
Pumo9g01670 548 Gene3D - 270 344 - -
Pumo9g01670 548 Gene3D - 365 468 - -
Pumo9g01670 548 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 158 177 - -
Pumo9g01670 548 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 544 548 - -
Pumo9g01670 548 CDD HLD_clamp_RarA 270 365 - -
Pumo9g01670 548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 336 IPR027417 -
Pumo9g01670 548 SUPERFAMILY UBA-like 3 42 IPR009060 GO:0005515
Pumo9g01670 548 FunFam AAA-type ATPase family protein 270 347 - -
Pumo9g01670 548 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 38 IPR015940 -
Pumo9g01670 548 SMART AAA_5 150 270 IPR003593 GO:0016887
Pumo9g01670 548 MobiDBLite consensus disorder prediction 63 101 - -
Pumo9g01670 548 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 1 543 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01670 114 323 Core DNA Replication Machinery Family AT1G63160 28.837 3.59e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01670 K07478 - gmx:100799257 942.569