Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01663 ATGTCACGAGTTGCAGTTGGCGGTTTTTCCAAAGCGTTTCCTTGGATGGAAAAGAGAGGTGACAGTGCTGATGCTGAGCTCCAACTTGATGCTGATTTTGTGCCGGATCCTGCCCAGACATGTACTGGAAATGAAAAGGGTGACAAGACCTCCCGGATTCCTCAGTCTAGACGACCTAATCTATCCTCACTGCAAATACCAGCATGGTCACTAGATATTGCATTATCTACTTTTGCAAAGACTGATGGTCCTTCGGTTTCACGATCAAGTCCTGGTTCCACAAGAGGACTTCCCCCAAGGCCAAATTCAGCCAAAGTCAGGTCTTCAATGAGAGGTTTACTTCCTCAGAGGAGCTTCAAGACAAATACCTGTTCCCAGGATATTGAAAGGACAGGTCTCATAGTTCCTAACACTCCCCCATCAGATGCTCCTTTGGATAAACCTTCCACTTCAACTCATCTCTATCTTAACAATAAGGTCATCTCCCCATCAACAAAAGCTTCACATTCATTACCAGTTACTCCATTTGCAACTTCAGCTGCAGAGAATGGACATGGAAGACATCTAGGGCGTGATTCTGGTTTAAATACAATGGAAGTTCATCAGCATATGACTCGATCATTTTCAGTCCCAGTTAATGGCAAAGCCACTAATTTAAGGGTTACAGATTCTAGGGGCTTGATTCGTGTAATTTCGGCAAAACCACATCTTGAAACTGTTGGTGGAAAGTCAACTGATGGTGCTTTGGTTCCAGAGATCGCCATTGAAGATGCTACTGAGGATATTCCAGAGGAACAAGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGGGGAAGGAGGGAATACACTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCACTTGCTCACCAAGAATGTGCAGTAAAGTGGTTTAGTATTAAGGGAAACAGGACTTGTGATGTCTGCAAGCAGGATGTCCAAAACCTCCCAGTAACACTGTTGAAAATTTATTAA 996 0.4367 MSRVAVGGFSKAFPWMEKRGDSADAELQLDADFVPDPAQTCTGNEKGDKTSRIPQSRRPNLSSLQIPAWSLDIALSTFAKTDGPSVSRSSPGSTRGLPPRPNSAKVRSSMRGLLPQRSFKTNTCSQDIERTGLIVPNTPPSDAPLDKPSTSTHLYLNNKVISPSTKASHSLPVTPFATSAAENGHGRHLGRDSGLNTMEVHQHMTRSFSVPVNGKATNLRVTDSRGLIRVISAKPHLETVGGKSTDGALVPEIAIEDATEDIPEEQAVCRICLVELGEGGNTLKMECSCKGDLALAHQECAVKWFSIKGNRTCDVCKQDVQNLPVTLLKIY 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01663 331 SUPERFAMILY RING/U-box 265 320 - -
Pumo9g01663 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 324 IPR013083 -
Pumo9g01663 331 Pfam RING-variant domain 269 316 IPR011016 GO:0008270
Pumo9g01663 331 CDD RING_CH-C4HC3_MARCH 269 317 - -
Pumo9g01663 331 MobiDBLite consensus disorder prediction 34 61 - -
Pumo9g01663 331 MobiDBLite consensus disorder prediction 80 97 - -
Pumo9g01663 331 MobiDBLite consensus disorder prediction 43 61 - -
Pumo9g01663 331 ProSiteProfiles Zinc finger RING-CH-type profile. 261 323 IPR011016 GO:0008270
Pumo9g01663 331 PANTHER OS02G0165000 PROTEIN 44 330 - -
Pumo9g01663 331 SMART ringv_2 268 317 IPR011016 GO:0008270
Pumo9g01663 331 MobiDBLite consensus disorder prediction 80 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01663 Pumo-Chr9 45770324 45776190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01663 252 323 C3H Transcription Factor Family AT2G37950 46.667 4.09e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01663 - - gmx:100789461 623.624