Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01653 ATGAAGGGCGAAGCGAGTTGTTCTTCCGGTGTGGGAAAGAAGCGGAAGCGGAGCAGAATGGAGGAGGATGGGTGGAAGGAGAAGAGATCATCAGAGCCTCGTCCATGCACGGAGTGCGGGAAGAAGTTCTGGTCTTGGAAGGCACTATTCGGCCACATGCGATGCCACCCAGAGCGTCAGTGGAGAGGGATCAATCCTCCCCCCAATGTCAGAAGACAACAACAACAACAACAACAAATGATGATCATGACCCAGGAAGACCACGAGGTTGCTGCCTGTTTACTCCTGCTTGCCAACGCCAATGCCAATGCCAAGGAGAAGGAGAAAGAGGAAGATGTTCATCAGTGCTCGAGTTGCAACAAGGTGTTCGGATCGCACCAGGCTCTTGGAGGGCACCGTGCCAGTCACAAGAACGTCAAGGGCTGTTTTGCCAATGCCATAGGCATGGGCATAGGAAGTAGTAGTAGTGAAGAGAACATGAACATGAACATGACGAGTGATGGTCACAAGTGCAGCATATGCCTGAGGGTGTTCTCGACTGGGCAGGCACTGGGTGGACACAAGAGGTGTCACTGGGACAAAGGGGACAACCTCCTCCTCCTTGACTCATCATCCAAGCCCTCCTCTGTCCTCGACTTGAATTTCCCTCCCCCCACTCACTCTCCTCCCCTCACTCTCGATTTGAGGTTGGGACTCTAA 699 0.5322 MKGEASCSSGVGKKRKRSRMEEDGWKEKRSSEPRPCTECGKKFWSWKALFGHMRCHPERQWRGINPPPNVRRQQQQQQQMMIMTQEDHEVAACLLLLANANANAKEKEKEEDVHQCSSCNKVFGSHQALGGHRASHKNVKGCFANAIGMGIGSSSSEENMNMNMTSDGHKCSICLRVFSTGQALGGHKRCHWDKGDNLLLLDSSSKPSSVLDLNFPPPTHSPPLTLDLRLGL 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01653 232 MobiDBLite consensus disorder prediction 1 37 - -
Pumo9g01653 232 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 16 232 - -
Pumo9g01653 232 Gene3D Classic Zinc Finger 12 92 - -
Pumo9g01653 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Pumo9g01653 232 Pfam C2H2-type zinc finger 113 137 - -
Pumo9g01653 232 Pfam C2H2-type zinc finger 35 58 - -
Pumo9g01653 232 Pfam C2H2-type zinc finger 169 194 - -
Pumo9g01653 232 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Pumo9g01653 232 SUPERFAMILY beta-beta-alpha zinc fingers 167 194 IPR036236 -
Pumo9g01653 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 141 IPR013087 -
Pumo9g01653 232 ProSitePatterns Zinc finger C2H2 type domain signature. 171 191 IPR013087 -
Pumo9g01653 232 Gene3D Classic Zinc Finger 111 191 - -
Pumo9g01653 232 ProSitePatterns Zinc finger C2H2 type domain signature. 116 136 IPR013087 -
Pumo9g01653 232 MobiDBLite consensus disorder prediction 9 36 - -
Pumo9g01653 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 191 IPR013087 -
Pumo9g01653 232 SUPERFAMILY beta-beta-alpha zinc fingers 33 136 IPR036236 -
Pumo9g01653 232 SMART c2h2final6 34 56 IPR013087 -
Pumo9g01653 232 SMART c2h2final6 169 191 IPR013087 -
Pumo9g01653 232 SMART c2h2final6 114 136 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01653 Pumo-Chr9 45655651 45656349 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01653 34 232 C2H2 Transcription Factor Family AT4G35280 53.881 1.46e-72 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo9g01653 zf-C2H2_6 4.2e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01653 - - gmx:100792631 305.834