Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01652 ATGTTGAGTTCAGGTAATGATTTTCTGAAGCAATATTCACGTAGTAAAGAAACTTTAGTTGAGTTGAGTGAGATCGATCAAGATCGTGACATGGAGTATGGTGCGTTTGGGAGCTTGTCGGAGTGTGAAGAAGATTTGATTGAGGAGTTGCTGGTAGAAGGTTGCTGGGTGGAAACACAGTACATGGAGCAAGAATTAGCGGAGGTGGCCATGGGGAAGAGATCATGGTGGATTGGACCCAAGGCTAATCCTGGGCCTGGGCCTGGGTCCGTGAAAGAGAGATTAGTGGTTGCGGTGGGGTACTTGAGAGAAGAATACACAAAGAACAACGCCAATGTGCTCATTCAGATATGGGTTCCCCTACGGAGGAGGACAGAAGGCAGGCTTGGGCTTGGACCTGGGTCTGATGAGTCAGTTTCGGTTGCTTTTCCGTTTCCTTTTCCGATGAACATTACCTCGACGAACGTAAACCTTCGGTTCTTTAGATGCCATGAGTACCCGCGGCTTCCTTATGTCCCTGGATCTTTGGCCCTTCCTGTCTTCGAAAGAGGCACTGCTACATGCCTAGGTGTCCTCCAGATTGTGGACACCATCAACTATCTCCCACAACTTGACAATAATAATAATAATATTCTCTGCAATGCTTTCGAGGCAGTTGATTTTAGGAGTTGCGAGAACCTGATTCCACCTGCTGTGAAGGTACTTGAGGATGAGGTGTATGAAGCAGCAGTGACTGAGATGATGGAGGTGTTGAGGTGTGTGTGCAAGACGCAGAATCTGCCTTTGGGTCTGACATGGGCTCCTTGCATCCATGAGCAACAAGCATGTAGGTATGGGCATGGGTATTCAACGGTGTCGACTGTGGAGAGAGCGTGTTTTGTGGGGGATGCCGACGTATTGGGGTTCCAGGAGGCCTGCTCTCAGCATCACCTTTTCCGCGGACAAGGAATCGTTGGGACAGCCTTCACAACAGCCAAACCCTGCTTTGCCATCGACATAACCGCCTTCACCAAAGCCGAATATCCTCTTGCTCACCATGCCAACATGTTTGGCTTGCACGCTGCCGTCGCTATTCCTCTAAGGACTACTCTCTACACCGATTTTCATTTTGATTTTGTCTTGGAGTTGTTCCTTCCCAAAGACTGCCGTGACCGGGAACACCAGAACCACTTGCTCAACTCATTATCTATCGTCCTTCACCAAGCTTGCCGCACCTTGCATGTTCTCATCCAGGATGAATTCACGCTGCAGCCTCCAAACACACTTGACATTCATGAGGAAATTCAGAAATCAGAATCCCAGTGTGGGTCGTGGATTGCACATATGATGGAGGCCCAAGCCCAAGCCCAAGCCCATCAGAAGGGATGGGAAAGGGAAAGGTCAGCACATCCACATGTACAAGAGCAGGTAGTGTTTTCAGATTCTCAAACTCACTCATTTGGTGGACGGCGTGGCAGAAAGTCAGGTGAGAAGAGACGAACCAAGGCAGAAAAGACTATCAGCTTGCCAGTTCTTAGACAGTACTTTGCAGGAAGCCTAAAAGATGCGGCAAAGAGCATTGGAGTTTGTCCCACAACTCTGAAAAGGATATGCAGACAGCATGGCATAACGAGGTGGCCTTCAAGGAAAATCAAAAAGGTAGGGCACTCTTTAAAGAAACTTCAACTTGTCATCGATTCAGTACAGGGTGCCGAGGGTGCCATACAGATCGGCTCCTTCTATAACAGTTTTCCGGAGTTGAGTTCTGCCACTTCTCAATCATCCAAGTCCAAGAACAACAACTATTCCCCACCCTCATCCTCTCCTGCAGCAGAAAGCCCTGTTCCTCAACATTTCACCACAGTACCCAACAACATTCCACCTTTGAGGGTAAAGGCTACTTTTGCCGATGAAAAAATCCGTTTTAGCTTGCAACCACTTTGGGGCTTCACAGATTTGCAGCTGGAAATTGCAAGGCGTTTCAATCTAAAGGATGTGAGCAACGTGGTTCTCAAGTATTTGGATGATGACGGGGAGTGGGTTGTTTTAGCGTGCGATGGTGATCTTGAGGAGTGTAAAGACTTGCATACAACGTCTCAGACCCGCACAATTAGACTCGCCCTATTTCAAGCTTCGCCTCTTAATCTACCAAATACATTCTCCAACACCAGTACCACCCCTTCTTCTTAA 2169 0.4804 MLSSGNDFLKQYSRSKETLVELSEIDQDRDMEYGAFGSLSECEEDLIEELLVEGCWVETQYMEQELAEVAMGKRSWWIGPKANPGPGPGSVKERLVVAVGYLREEYTKNNANVLIQIWVPLRRRTEGRLGLGPGSDESVSVAFPFPFPMNITSTNVNLRFFRCHEYPRLPYVPGSLALPVFERGTATCLGVLQIVDTINYLPQLDNNNNNILCNAFEAVDFRSCENLIPPAVKVLEDEVYEAAVTEMMEVLRCVCKTQNLPLGLTWAPCIHEQQACRYGHGYSTVSTVERACFVGDADVLGFQEACSQHHLFRGQGIVGTAFTTAKPCFAIDITAFTKAEYPLAHHANMFGLHAAVAIPLRTTLYTDFHFDFVLELFLPKDCRDREHQNHLLNSLSIVLHQACRTLHVLIQDEFTLQPPNTLDIHEEIQKSESQCGSWIAHMMEAQAQAQAHQKGWERERSAHPHVQEQVVFSDSQTHSFGGRRGRKSGEKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYNSFPELSSATSQSSKSKNNNYSPPSSSPAAESPVPQHFTTVPNNIPPLRVKATFADEKIRFSLQPLWGFTDLQLEIARRFNLKDVSNVVLKYLDDDGEWVVLACDGDLEECKDLHTTSQTRTIRLALFQASPLNLPNTFSNTSTTPSS 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01652 722 MobiDBLite consensus disorder prediction 584 615 - -
Pumo9g01652 722 Pfam RWP-RK domain 500 547 IPR003035 -
Pumo9g01652 722 Pfam PB1 domain 622 703 IPR000270 GO:0005515
Pumo9g01652 722 PANTHER PROTEIN NLP8 84 712 IPR045012 GO:0003700
Pumo9g01652 722 ProSiteProfiles PB1 domain profile. 621 704 IPR000270 GO:0005515
Pumo9g01652 722 CDD PB1_NLP 622 703 IPR034891 -
Pumo9g01652 722 ProSiteProfiles RWP-RK domain profile. 486 567 IPR003035 -
Pumo9g01652 722 SMART PB1_new 621 704 IPR000270 GO:0005515
Pumo9g01652 722 MobiDBLite consensus disorder prediction 473 496 - -
Pumo9g01652 722 SUPERFAMILY CAD & PB1 domains 620 706 - -
Pumo9g01652 722 Gene3D - 620 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01652 Pumo-Chr9 45630193 45633163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01652 68 698 NLP Transcription Factor Family AT1G76350 39.398 1.49e-151 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pumo9g01652 PB1 1.5e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01652 - - gmx:100792100 850.892