Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01650 ATGGGAAATTGCTGGGGTTCTCCACCTCAAAATCCAACCCCGACAACTACCGGTAACCTTAGTACAGCTACACCGGGAACATCTCAGGCGATCAGCAGCAGCAGCTATACTACTACTACTACAACCACTACTTCTTCTGGAAGTGGGAGCAGCTCCATAAATAGCAAGTTCTCGGTGTCAAGCGGTGATCAACCTTATCCAAATGGACAGATCTTACCTACCTCTAATTTGAGGATCTTCACTTTTGCCGAGTTGAAGGCTGCAACTAGGAATTTCAGAGCTGATACAGTACTTGGGGAGGGTGGTTTTGGAAAAGTCTTCAAGGGTTGGCTTGAAGAAAAGGCCACGTCAAAGAGTGGAAGCGGAACAGTGATTGCCGTCAAAAAACTCAACAATGAAAGCTTACAAGGACTTGAGGAGTGGCAGTCCGAAGTAAATTTTCTAGGACGCCTTTCTCATCCTAATCTTGTTAAGCTGTTGGGATACTGTTTGGAGGAATCAGAGCTTCTTCTGGTCTATGAATTCATGCAAAAAGGCAGTTTGGAAAACCATCTATTTGGAAGGGGTTCTGCTGTTCAACCACTTCCTTGGGACATCAGGCTTAAGATAGCAATTGGAGCAGCTCGTGGCCTTGCATTCTTGCATACATCCGAGAAAGTAATTTACAGAGACTTCAAGGCCTCCAATATATTGCTTGATGGGTCCTACAACGCAAAGATATCAGACTTTGGCTTGGCAAAACTGGGTCCTTCAGCTAGTCAATCCCATGTGACAACAAGGGTGATGGGCACATACGGTTATGCAGCTCCTGAATATGTGGCCACAGGGCATCTATATGTAAAGAGTGATGTATACGGGTTTGGAGTTGTTTTGGTGGAAATACTAACAGGCCTACGAGCACTTGATCCCAACCGTCCAAGTGGGCAACATAGTCTAACAGAGTGGGTGAAACCATACCTGCATGACAGAAGAAAATTGAAGGGCATTATGGATTCTCGATTGGAAGGAAAATTTCCATCAAAAGCTGCATTTCGTATAGCTCAGCTTTCTTTGAAATGTCTTGCATCTGAGCCCAAACAGCGGCCATCAATGAAGGAAGTTTTGGAGAATTTGGAGCGAATTCAAGCTGCCAATGAGAAACCTGTGGAGCCCAAATTCCGTTCTACTCATGCCCGTCAAGGTCACCAGGCTGTGCACCATCGTTCTCCACATCAGGACGGTAGCTAG 1227 0.4564 MGNCWGSPPQNPTPTTTGNLSTATPGTSQAISSSSYTTTTTTTTSSGSGSSSINSKFSVSSGDQPYPNGQILPTSNLRIFTFAELKAATRNFRADTVLGEGGFGKVFKGWLEEKATSKSGSGTVIAVKKLNNESLQGLEEWQSEVNFLGRLSHPNLVKLLGYCLEESELLLVYEFMQKGSLENHLFGRGSAVQPLPWDIRLKIAIGAARGLAFLHTSEKVIYRDFKASNILLDGSYNAKISDFGLAKLGPSASQSHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLVEILTGLRALDPNRPSGQHSLTEWVKPYLHDRRKLKGIMDSRLEGKFPSKAAFRIAQLSLKCLASEPKQRPSMKEVLENLERIQAANEKPVEPKFRSTHARQGHQAVHHRSPHQDGS 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01650 408 ProSitePatterns Protein kinases ATP-binding region signature. 98 129 IPR017441 GO:0005524
Pumo9g01650 408 ProSiteProfiles Protein kinase domain profile. 92 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g01650 408 SUPERFAMILY Protein kinase-like (PK-like) 64 371 IPR011009 -
Pumo9g01650 408 MobiDBLite consensus disorder prediction 376 390 - -
Pumo9g01650 408 CDD STKc_IRAK 98 374 - -
Pumo9g01650 408 Pfam Protein tyrosine and serine/threonine kinase 95 371 IPR001245 GO:0004672|GO:0006468
Pumo9g01650 408 FunFam Serine/threonine-protein kinase PBS1 176 389 - -
Pumo9g01650 408 PANTHER OS01G0588500 PROTEIN-RELATED 43 375 - -
Pumo9g01650 408 Gene3D Transferase(Phosphotransferase) domain 1 176 396 - -
Pumo9g01650 408 MobiDBLite consensus disorder prediction 376 408 - -
Pumo9g01650 408 FunFam Serine/threonine-protein kinase BIK1 59 175 - -
Pumo9g01650 408 MobiDBLite consensus disorder prediction 1 67 - -
Pumo9g01650 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Pumo9g01650 408 Gene3D Phosphorylase Kinase; domain 1 76 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01650 Pumo-Chr9 45591875 45595708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01650 62 379 Receptor kinase-like Gene Family AT4G02010 48.447 1.87e-100 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pumo9g01650 PK_Tyr_Ser-Thr 4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01650 - - gmx:100305417 737.643