Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01648 ATGCAGCTTGCCTATCATAGGTTCTGGCTATGCCTTGCATTAACATTATTCATCCTATTACATGGTCATGGAGCTTCCAGACATGATGATGTCGTCAAAATCGGTGCCATATTCACACTAAAAACTATAAACGGACGAGTTTCCAAAATTGCCATCCAAGCTGCTGAGAAAGATGTGAATTCCGATCCTCGCATCCTGGGGGGACGTAAATTGTCCATAAACATCCATGATTCCAACTTCAGTGGTTTTCTTAGCTTTATTGGGGCCCTCAAGTTCTTGATGACCGACACAGTAGCTATAATTGGTCCACAAACTTCAGTAATGGCCCATGTGCTTTCGCATCTCGCAAATGAGCTCCATGTTCCCCTACTGTCCTTCACGGCTCTGGATCCCACCCTAACACCTCTCCAGTATCCTTATTTTGTCCAAACAGCACCCAACGATCAGTTCCACATGACTGCAGTTGCGGACATAATTAGTTATTTTGGTTGGAGAGAAGTCATAGCAGTATTCAGTGATGATGATCAGAGTCGAAATGGGATAACTGTTTTGGGAGACAAACTTGCAGAGAGACGCTGTAAGTTGTCTTACAAAGCAGCACTGCCCCCTGAACCAAAAGCCACTCCAAGCCATGTTACTAGTCAGTTAGTGAAGATTAAGAGTATGGAATCTCGAATAATCGTTCTAAACACCTTCGCGCAAACAGGTCTCCTGGTTTTTGAGGTGGCTCAAAAACTAGGAATGATGAGCAAAGGGTATGTCTGGATAGCTACTGCTTGGTTATCAACTGTTTTAGATTCAACTTCACTACCTTCAAATACTCCTAACTCAATTCAAGGAGTTATTACCTTTCGCCCTCACACCCCTCAATCCAGAAAAAAACAGGCATTTATCTCAAGGTGGAAACACATAAGTAATGGTTCAATTGGGTTAAATCCATACGGACTCTATGCATATGATTCTGTTTGGATGATTGCTCAGGCACTCAAATTGTTTTTTGATCGGAATGGCACCATTTCATTCTCTAATAATACAAATTTAAGTGGTACGAGTACGAGGGAAGAGACTCTGGATTTTGGTGCTTTGAGCGTTTTTGATGGAGGGAAGCAGCTACTTGATAACATATTGCACATTAATATGACTGGATTGACTGGACCTATTCAATTTGGTTCAGATAGATCTCCTCCACATCCATCATATGACATCCTTAATGTAATATCTACGGGTTATAGGAGTATCGGTTACTGGTCTAATTATTCTGGGCTCTCTGTAATAACCCCTGAGAAACTTCATGCAAAGCCTGCCAATCGTTCAATTTCAAGCCAACATCTAAACCCTGTCATATGGCCTGGAAATACAACACAAAAGCCTCGTGGATGGGTTTTCCCAAATAATGGGAGGCAACTGAGAATTGGAGTTCCCAACAGAGTTAGTTATCGAGACATGGTTTCACAAATAAATGGCACCAATACAGTTCAAGGATATTGCATAGATATATTCCTAGCCGCCGTAAAATTGCTTCCATATGCAGTTCAATATAAGTTCATTCTGTTTGGAGATGGACACAAGAACCCAAGCTACTATGATCTTGTCAACATGATTACTTCTGATGTTTTTGATGCTGCTGTAGGTGACATTGCAATTGTCACTGACCGAACAAAGATTGTGGATTTTACTCAACCATATATAGAGTCGGGGCTAGTTGTGGTTGCTCCCGTAAAAAAATTGAAGTCAAATGCTTGGGCTTTCTTGCGACCATTTACTCCACAGATGTGGGGTGTCACTGCATTTTTTTTCCTTTTTGTTGGAGCAGTGGTGTGGATTCTTGAACATAGAACAAACGATGAGTTTCGGGGGTCGCCGAAGGAACAGATAGTTACAGTTCTTTGGTTTAGTTTCTCAACCATGTTCTTTGCGCACAGAGAAAACACAGTTAGTCCACTTGGCCGAGTTGTGTTGATAATCTGGCTTTTTGTGGTTCTGATAATCAATTCAAGCTACACTGCAAGCTTGACATCAATTCTCACTGTGCAGCAGCTGTCCTCACCCATAACAGGAATTGATAGCTTGATATCCAGCAGTGAACGTATAGGGTTCCAAGTGGGCTCATTTGCTGCAAACTATCTGACTGAGCAACTCAACATCCCCAAACATAGACTTGTTCCTCTTGGCTCACCAGAAGAATATGCTGTTGCCCTTGAAAGGGGAACTGTTGCAGCTGTGGTGGATGAACGACCATATGTAGAACTCTTCCTTTCAAACCACTGCCAATTCTCAATTAGGGGCCAAGAGTTCACCAAAAGTGGATGGGGATTTGCATTCCCGAGAGACTCTCCTTTTGCAATTGATATGTCAACTGCGATTCTAACCCTATCTGAGAATGGTGAACTTCAGAGGATCTATGAAAAGTGGCTTTCAGAAAAGGCTTGTGGTTTTCACAGTACTGAGGATGAACAGCTTCAATTAAATAGCTTCCGGGGCTTGTTTCTAATCTGTGGAATAACATGTTTCCTGGCACTTCTTATCTACTTCTTATCAATGGTACGCCAATTCAGTAAAAAATCCCCTCAAAAAGTTGGTCCTTCTAATCGTTGCAGCTCACGTTCTGCACGCATTCAGACATTTCTACATTTTGTTGACGAAAAAGAAGACGTATCACCCAAGAAGTTAAAAAGAAAACTCGAGTATATTTCATCAAATCGTTTGAGGAGCATATCCAAGAGAGTACAAGTGGACATTTCCCAAGAGGCTCCTTCTCCTTGTGGTTAA 2769 0.4186 MQLAYHRFWLCLALTLFILLHGHGASRHDDVVKIGAIFTLKTINGRVSKIAIQAAEKDVNSDPRILGGRKLSINIHDSNFSGFLSFIGALKFLMTDTVAIIGPQTSVMAHVLSHLANELHVPLLSFTALDPTLTPLQYPYFVQTAPNDQFHMTAVADIISYFGWREVIAVFSDDDQSRNGITVLGDKLAERRCKLSYKAALPPEPKATPSHVTSQLVKIKSMESRIIVLNTFAQTGLLVFEVAQKLGMMSKGYVWIATAWLSTVLDSTSLPSNTPNSIQGVITFRPHTPQSRKKQAFISRWKHISNGSIGLNPYGLYAYDSVWMIAQALKLFFDRNGTISFSNNTNLSGTSTREETLDFGALSVFDGGKQLLDNILHINMTGLTGPIQFGSDRSPPHPSYDILNVISTGYRSIGYWSNYSGLSVITPEKLHAKPANRSISSQHLNPVIWPGNTTQKPRGWVFPNNGRQLRIGVPNRVSYRDMVSQINGTNTVQGYCIDIFLAAVKLLPYAVQYKFILFGDGHKNPSYYDLVNMITSDVFDAAVGDIAIVTDRTKIVDFTQPYIESGLVVVAPVKKLKSNAWAFLRPFTPQMWGVTAFFFLFVGAVVWILEHRTNDEFRGSPKEQIVTVLWFSFSTMFFAHRENTVSPLGRVVLIIWLFVVLIINSSYTASLTSILTVQQLSSPITGIDSLISSSERIGFQVGSFAANYLTEQLNIPKHRLVPLGSPEEYAVALERGTVAAVVDERPYVELFLSNHCQFSIRGQEFTKSGWGFAFPRDSPFAIDMSTAILTLSENGELQRIYEKWLSEKACGFHSTEDEQLQLNSFRGLFLICGITCFLALLIYFLSMVRQFSKKSPQKVGPSNRCSSRSARIQTFLHFVDEKEDVSPKKLKRKLEYISSNRLRSISKRVQVDISQEAPSPCG 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01648 922 SMART AABind_6 468 808 IPR001638 -
Pumo9g01648 922 FunFam Glutamate receptor 580 710 - -
Pumo9g01648 922 Pfam Bacterial extracellular solute-binding proteins, family 3 487 806 IPR001638 -
Pumo9g01648 922 SUPERFAMILY Periplasmic binding protein-like II 447 807 - -
Pumo9g01648 922 PIRSF IGluLR_plant 2 919 IPR017103 -
Pumo9g01648 922 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 865 IPR015683 -
Pumo9g01648 922 Gene3D - 454 579 - -
Pumo9g01648 922 CDD PBP1_GABAb_receptor_plant 33 424 IPR044440 -
Pumo9g01648 922 Pfam Ligand-gated ion channel 807 835 IPR001320 GO:0015276|GO:0016020
Pumo9g01648 922 SUPERFAMILY Periplasmic binding protein-like I 26 461 IPR028082 -
Pumo9g01648 922 Gene3D - 147 422 - -
Pumo9g01648 922 FunFam Glutamate receptor 706 809 - -
Pumo9g01648 922 FunFam Glutamate receptor 147 306 - -
Pumo9g01648 922 Gene3D - 580 714 - -
Pumo9g01648 922 Gene3D - 740 771 - -
Pumo9g01648 922 FunFam Glutamate receptor 464 580 - -
Pumo9g01648 922 SMART GluR_14 470 807 IPR001320 GO:0015276|GO:0016020
Pumo9g01648 922 CDD GluR_Plant 467 805 - -
Pumo9g01648 922 Gene3D - 50 397 - -
Pumo9g01648 922 Gene3D - 772 804 - -
Pumo9g01648 922 Pfam Receptor family ligand binding region 50 406 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01648 Pumo-Chr9 45564280 45568509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01648 24 908 Ion Channels AT2G17260 62.249 0.0 1147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01648 K05387 - gmx:100793969 1431.39