Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01618 ATGGAGATGTATCGGTTTTCTATCAAGTATAACAGGACTCCTCTGTTATGCACTGAGCTCGTCTTTCAAGCATCTTTTCGGAGAGTGGAGTTTGTTGAAGATAATCTTGTATGCGTTGTGTTACTCGGAAAGAAGTGGCAACTGTCAAGGAGTCTCACGTTGAAAGCTCGTGTGGGATTTTTGGTTTTGATGCTCACTTCTGTGTACTCTTTTTTCTATGACAAGGCAGTGAATGGAAAACCAGATGTATTTGGCCTGATTTCGTGTGCTGCATTTGCTTTGATGTCATTCAGTTTGTCGAGACAGGTTGACCTCGGATTTGAGCTTATGAAGATTAACTTGATGTTGGCTTCTCTTGGGGGAGTCTTCAGTTATTTCCTTATCATTCTTCGGTCTTCTTTGGATTCCCAACAAGAGATTGGAACTGTTGGTGCAACTGTCACCAGTCATGTAGCCATAGAAATTGACACTGCAAGTAGCTTGGAAACAGGAGCTAACATTGGCATCAACAATGGTTTCCCATCTGAATATAACAGCAATCACCACCGAGAATTACGCTCGTTGCGTAGAAGGCATTTTGTGACAACTGTTCCGGACCAGGTGTTTCTAAAGAATGCAAACCGGAGAAGTGCCGATGTTGCAATGAGCATACAAGCTGAATTTAGGGAACACATACTGAAGGAGTTAAACGAATTTCAATTTTCCGATCCAGAGGCTGAAGCACGCAAGATAGTTGCAGCCATGAAAATTCAGCACGCCTTTCGAAACTATAAGACAAGGAAGATGGCTGTTGCTGCTACTCGCATCCAGCATACTTTCCGGGCATGGAAGATCCATAAAGAATCTCTCAACATTCGTCACCAGACTATTAAAATTCAAGCTGCTTTTCGAGGTTTCCAGGTGCGGAAACAACATTCTAAAGTTCTCTGGTCTATTGGTGTCATTGATAAAGCAATCATGCACTGGCGCTTTAAGAGAAGAGGCTTTCGTGGGCTCCATGTTAACCCGGTTCAAGAAATGGAAGATCACAGACGGGAAAATGAAGTAGAGAATGAAAATCAAGCCAAACAACATGTTATAAAATTTGTAGTACAAGCATGCTCTAAGAAAACAAGTCAATAG 1122 0.4207 MEMYRFSIKYNRTPLLCTELVFQASFRRVEFVEDNLVCVVLLGKKWQLSRSLTLKARVGFLVLMLTSVYSFFYDKAVNGKPDVFGLISCAAFALMSFSLSRQVDLGFELMKINLMLASLGGVFSYFLIILRSSLDSQQEIGTVGATVTSHVAIEIDTASSLETGANIGINNGFPSEYNSNHHRELRSLRRRHFVTTVPDQVFLKNANRRSADVAMSIQAEFREHILKELNEFQFSDPEAEARKIVAAMKIQHAFRNYKTRKMAVAATRIQHTFRAWKIHKESLNIRHQTIKIQAAFRGFQVRKQHSKVLWSIGVIDKAIMHWRFKRRGFRGLHVNPVQEMEDHRRENEVENENQAKQHVIKFVVQACSKKTSQ 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01618 373 Gene3D - 263 309 - -
Pumo9g01618 373 SMART iq_5 284 306 IPR000048 GO:0005515
Pumo9g01618 373 SMART iq_5 242 264 IPR000048 GO:0005515
Pumo9g01618 373 Pfam IQ calmodulin-binding motif 246 261 IPR000048 GO:0005515
Pumo9g01618 373 Pfam IQ calmodulin-binding motif 289 305 IPR000048 GO:0005515
Pumo9g01618 373 Coils Coil 337 357 - -
Pumo9g01618 373 Gene3D - 209 262 - -
Pumo9g01618 373 ProSiteProfiles IQ motif profile. 285 309 IPR000048 GO:0005515
Pumo9g01618 373 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 184 356 - -
Pumo9g01618 373 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 312 IPR027417 -
Pumo9g01618 373 ProSiteProfiles IQ motif profile. 246 272 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01618 Pumo-Chr9 44614506 44616259 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01618 217 373 CAMTA Transcription Factor Family AT3G16940 46.951 1.53e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01618 K21596 - cam:101500062 270.011