Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01597 ATGGCGGGTAATTCCTCATCACCTTGTGCTTCTTGCAAGTTGTTGAGACGCCGTTGTTCTCAGGATTGCATCTTTGCTCCTTATTTTCCTTCAAATGATCTCCGCAAGTTTGCCATTGTGCACAAGGTCTTTGGCTGCAGCAATATCACCAAAATGCTCAAGGATCTTCCAGTTCACCAAAGAGAAGATGCAGTGAGCAGTTTAGTTTATGAGGCAAATGCAAGAATTAGAAATCCTGTATATGGTTGTGTTGGAACCATATCTTATCTAGAAAATCAAGTTTCTGAATTGCAAATTCAGCTTGAAGTTGTTCAGGCAGAGATTCTTGGCATGCAAATGTAG 342 0.4094 MAGNSSSPCASCKLLRRRCSQDCIFAPYFPSNDLRKFAIVHKVFGCSNITKMLKDLPVHQREDAVSSLVYEANARIRNPVYGCVGTISYLENQVSELQIQLEVVQAEILGMQM 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01597 113 Coils Coil 87 107 - -
Pumo9g01597 113 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 113 - -
Pumo9g01597 113 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Pumo9g01597 113 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01597 Pumo-Chr9 44198696 44199520 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01597 1 113 AS2 family AT2G30130 76.106 2.53e-63 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo9g01597 LOB 1.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01597 - - bvg:104905963 188.348