Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01593 ATGGTGGGTAATTCTTCACCTTGTGCTTCGTGCAAGTTGTTGAGACGCCGTTGTTCTCAGGATTGCATCTTTGCTCCTTATTTTCTTTCCAATGATCTCCGCAAGTTTGCCATTGTGCACAAGGTCTTTGGCTGCAGCAATATCACCAAAATGCTCAAGGATCTTCCAGTTCACCAAAGAGCAGATGCAGTGAGCAGTTTGGTTTATGAGGCAAATGCAAGAGTTAGAAACCCAGTGTATGGTTGTGTTGGAATCATATCTTACCTAGAAAGTCAAGTTTCTGAGTTACAAAAGCAGCTTGCAATAGCTCACGCAGAGATTCTTAGCATGCGAATGTAG 339 0.4307 MVGNSSPCASCKLLRRRCSQDCIFAPYFLSNDLRKFAIVHKVFGCSNITKMLKDLPVHQRADAVSSLVYEANARVRNPVYGCVGIISYLESQVSELQKQLAIAHAEILSMRM 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01593 112 Coils Coil 86 106 - -
Pumo9g01593 112 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Pumo9g01593 112 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Pumo9g01593 112 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01593 Pumo-Chr9 44159471 44159976 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01593 4 112 AS2 family AT2G30130 76.147 7.36e-60 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo9g01593 LOB 2.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01593 - - gmx:100799327 182.956