Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01575 ATGCCGAGTCAATCCGAGTCACCCAGCAACACACTGAGTCAACTCGCTCAGAACATGTTCTCCGACAACAACAGCAACATCATGCTCGCAGCCATCGTTTCCTTGCTCCTAGTAATCCTCTTCGTCCTCCTACTCCATGTGTACGCCAAATGGTTCTTATTTCAGGCACAATCACGTTCCCAGACTCGCCGGCAGCGAGCTCCGGTGACCGTCTCCGGCGTTCTGGAACCTTCCCATTTCCACAGAATCAACATAGAATCCTCACTCACGTGCACCAAAGGCCTTGACTCAGCAACAGTTTCGGCAATTCCCATGTTTGTGCAAGGAACAGAGAAAACAGAGAAAGCAGAGGAAACAGAGGAATTGGAATGTGTGATTTGTTTGAGTGTTATTGAGGAGGGTGAGATTGGAAGGAGCTTGCCAAAGTGTAACCACGCTTTTCACATGGAGTGCATTGACATGTGGTTGAGTTCACATTGCAATTGTCCAATTTGTAGAGCTCCTATCGTGGTAAGTGGAGATTCTCAATTGGGTTCTGTTGATGGTGACAGTGATGGTGTGGTTGAGATTGTGGTTGTTACTCCGGGTTATGAGATTAGTGACAATGAGCGTGGTGGGGTGAGTGGTTCTGTTCCAGAAACTTCTTCATCTTTGTTGGGTTTCTCTTTGAAGAGATTGCTGAGTAAGGTTTTTCTGTCACCTGATCATGTAACTGAATTGGATGCTTCACAATGA 735 0.4667 MPSQSESPSNTLSQLAQNMFSDNNSNIMLAAIVSLLLVILFVLLLHVYAKWFLFQAQSRSQTRRQRAPVTVSGVLEPSHFHRINIESSLTCTKGLDSATVSAIPMFVQGTEKTEKAEETEELECVICLSVIEEGEIGRSLPKCNHAFHMECIDMWLSSHCNCPICRAPIVVSGDSQLGSVDGDSDGVVEIVVVTPGYEISDNERGGVSGSVPETSSSLLGFSLKRLLSKVFLSPDHVTELDASQ 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01575 244 SUPERFAMILY RING/U-box 113 172 - -
Pumo9g01575 244 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Pumo9g01575 244 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 14 170 - -
Pumo9g01575 244 SMART ring_2 124 165 IPR001841 -
Pumo9g01575 244 CDD RING-H2_EL5-like 124 166 - -
Pumo9g01575 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 173 IPR013083 -
Pumo9g01575 244 Pfam Ring finger domain 123 166 IPR001841 -
Pumo9g01575 244 FunFam RING-H2 finger protein ATL1 82 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01575 Pumo-Chr9 43879076 43880097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01575 26 167 Rapid Response to Elicitors AT3G16720 39.583 1.45e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01575 - - gmx:100777829 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01575 9 43879076 43880097 Pumo9g01575 9 43879076 43880097 ECH
Pumo1g00616 1 9398479 9399382 Pumo9g01575 9 43879076 43880097 PCT