Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01568 ATGTCTTGCTCCGTCGCGGTTTCCAATTCGCCGGTGTTCTCTCCTTCCTCTTCCCTCTTCTGCAACAAGCCCTCCATCATCTCTTCTTCGCCGGAATCCCTTTCGCTTTCTCTGTCGCATCTGAAACCTTCGAACTCTTCTACGACGTCGTCCTGTGCCGCTTCTTCTTGTTCTTCTCCCTCTGCTGCTGCTGCTGCTTCTTCTTCTCCTTCTTCTCCGTTTCGGCTTCGGCTTCCCAAGCCTCCCACCGCGTTCTCTGCGTCTTCTTCTGCTTCTGCTTCTGCTTCGTCTCCCTCTCCGAACGGCACCGTTTTGAAGAGGAAGCGACCCGCTAGGTTGGACATACCCGTTTCTTCTCTCACCTTTGCGGTTCCGCCCACGCCCTCCGCGGCGGCGCGTGACGTGGTCGAGGCTGAGGAAGATGGGTTTGGAGTGTACTGCAAGAGAGGGAGGAGGGAGTACATGGAGGATCGTTACACCGCTGGGGATAATCTTCGCGGAGAACACAAACTGGCTTTTTTTGGCATATTTGATGGGCACGGAGGTGCAAAGGCTGCTGAATTTGCTGCAAATAACTTAGAAAAGAATGTGTTAGATGAAGTGATCGTGAGAGATGAAGATGATGCTGAGGAGGCAGTGAAGCGTGGTTACCTAAACACGGATTCGGATTTCCTAAAGGAGGATCTCCATGGTGGCTCTTGCTGTGTGACAGCATTGATTAGGAATGGCAACCTTGTTGTGTCCAACGCTGGTGATTGCCGCGCTGTCATTAGCAGAGGGGGTGTTGCTGAGGCCCTAACATCTGATCACAGGCCTTCAAGGGAAGACGAAAGAGACAGAATTGAGAACCTGGGTGGCTATGTTGATTTATGCCGCGGTGTTTGGAGGATCCAGGGATCTCTGGCTGTGTCTAGGGGAATTGGAGATAGACACCTGAAACAATGGGTGACAGCAGAACCTGAGACCAAAGTTCTCAGAATTGAACCTGAACATGACTTGTTAATCTTAGCTTCAGATGGATTATGGGATAAGGTTAGTAATCAGGAAGCAGTAGATATTGCTCGTTCTTTTCTCGTAGGGAACAACAAATCACAACCATTGCTGGCTTGTAAAAAGCTTGTAGATTTGTCAGTTTCACGAGGCTCTTTGGATGATACAAGTGTTATGCTAATCAAATTGGAGCACTATATTTAA 1194 0.495 MSCSVAVSNSPVFSPSSSLFCNKPSIISSSPESLSLSLSHLKPSNSSTTSSCAASSCSSPSAAAAASSSPSSPFRLRLPKPPTAFSASSSASASASSPSPNGTVLKRKRPARLDIPVSSLTFAVPPTPSAAARDVVEAEEDGFGVYCKRGRREYMEDRYTAGDNLRGEHKLAFFGIFDGHGGAKAAEFAANNLEKNVLDEVIVRDEDDAEEAVKRGYLNTDSDFLKEDLHGGSCCVTALIRNGNLVVSNAGDCRAVISRGGVAEALTSDHRPSREDERDRIENLGGYVDLCRGVWRIQGSLAVSRGIGDRHLKQWVTAEPETKVLRIEPEHDLLILASDGLWDKVSNQEAVDIARSFLVGNNKSQPLLACKKLVDLSVSRGSLDDTSVMLIKLEHYI 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01568 397 MobiDBLite consensus disorder prediction 38 110 - -
Pumo9g01568 397 ProSitePatterns PPM-type phosphatase domain signature. 173 181 IPR000222 GO:0043169
Pumo9g01568 397 SMART PP2C_4 132 391 IPR001932 -
Pumo9g01568 397 MobiDBLite consensus disorder prediction 83 103 - -
Pumo9g01568 397 Pfam Protein phosphatase 2C 143 385 IPR001932 -
Pumo9g01568 397 Gene3D - 133 396 IPR036457 -
Pumo9g01568 397 SUPERFAMILY PP2C-like 143 394 IPR036457 -
Pumo9g01568 397 FunFam probable protein phosphatase 2C 25 135 396 - -
Pumo9g01568 397 PANTHER PROTEIN PHOSPHATASE 2C 85 391 IPR015655 GO:0004722|GO:0006470
Pumo9g01568 397 CDD PP2Cc 142 393 IPR001932 -
Pumo9g01568 397 ProSiteProfiles PPM-type phosphatase domain profile. 142 393 IPR001932 -
Pumo9g01568 397 MobiDBLite consensus disorder prediction 38 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01568 Pumo-Chr9 43804295 43806890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01568 1 397 PP2C-type Phosphatase Gene Family AT2G30020 64.216 2.57e-170 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01568 K17506 - gmx:100797934 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01568 9 43804295 43806890 Pumo9g01568 9 43804295 43806890 ECH
Pumo1g00621 1 9455265 9456917 Pumo9g01568 9 43804295 43806890 ECH
Pumo1g00621 1 9455265 9456917 Pumo9g01568 9 43804295 43806890 PCT