Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01565 ATGCGCCATTCTCAGTTTTCAACCATGTCTCTGAATCACTCTCCAATGGATGTTGATGGTGAGAATTCTTATGGGAGCACTAAGCGTAGAAAAGGGTCGAGGAAAAGAAAGCTTCTTGTCAACGAGAGAGTTGAGGTGAAGAGTTTGGAAGAGGGCTTTCAGGGTTCGTGGCACCCGGGGACGGTGGTCCGTTGTGAGAGGCAGAAGCGTCATGTCAAATATGACAACATTCTAGATGATGACGGATCAAAGTATCTCGTGGATGTGGTGTGTGTTTCACCTGTTTTGGATGGTCTTGGTACTTCTTCAGATTGTAGCAGCAATGAACGTGGATTCATTAGACCACTGCCTCCTCCGCTTGCGTTTGGGGAGAGGGACCTTCCATTTGGTCTCTGTGTTGATGTGAATTATCAAGAAGCCTGGTGGGAAGGTGTTATATTTGATCACTGCAATGGAATGGAGGAGAGGAGCGTGCTCTTCCCGGATTTGGGTGATGAAATTAAGGTTGGAATTCATCAATTGCGGATAACTCAGGATTGGGATGAAGCTACCGAGAATTGGGAGCCGCGAGGGAAGTGGGTGTTCCTTGAAGTGATTGAGGAGTATGAGAAGGAATCCGTTGTTGCAATTTCACTGAAGCAAGTTTGGTATGATGTAAGGGCAACAAACGAGTTTGACAATATAAAGCACTGGACTTGTAATGTGAAGGAATTGTGGAGAGACCTTGTAAATGAGGTGGTTGGTGACTACTATGTTCTCACACTAGAACAAGTTTTCCCAGCCTTAAACCTTCCGGAGGATTTCTTGAAAGAAACACCAGAACTGAAGTCAGTTGAACCTACTGACAACATTCATTGTGATGCTGGACATAGCAATGTATTTGGTTCTGACATTGGAGCATCTGATAGCCCTATGGAAAATGGTAACGCGCCAAACTTGTTGGATAGCGATAAAAAATGTGGTGGCATCATTCCCCTTCAAGAGGAATATGATAAAGATCCTTTGGTGGATGGGGCATCTGAGAAGGAAATTATTTTGCAGGAAGAACCTGTATCTCCAGTTCAAGAGATCATGCCTGAGGCTGGTGAAGTAATGCCAGGTTCTAGCTGTTGTGGAAAGAAGAGAAAACGTAGACGCTCAGCGTCCATACATTGGAAACCACTGGAACTGACCAAGGTTGAATTCTGTCCTGATGTTATTAACGAATATTTACTTGGATGTGGGAGCAAGACCATTAGGGAACTTTTGAAGACTAAAGTACGGAAACATCTTGCATATCTTGGATGGAAAATTGAGTGGGCTGAAGATAAATATTTTCCTGGGCGAGGACGCCACAGGTACAAGTCACCTGATGCACAGGACCAGAAGGTTTACACTTCAATTATTCAAGTTTTGACACATTTGCAAATGGAGTCCAACTTGAACAATGTGCAGCAGCCACAAATTGATCACGATAGGATGCATTCTACAAATGACACTAATCTTTCACATCTGCTGTCAGATCAACCCCCAAATGCCCAGGATGTAGATGTTTGTCCTCCAAATGGGAAACGTTCTCGTGCCAAAGTTGAAGTTGAGCCGGAATTTTGTCCTCAAGCTGTTCTGAAATATTACTTGAATGCATCAAAGAAACATTGGGTTGATAAAGGAAAATGGAGACTGAAAGCAAAGAAGCATCTGTTAGCAGAAGGATGGACCTTTGACTACCCAACCAAGAAGAGACGGACAACTCTGTACATGTCTCCACGAAATCAGTGGTTGGGAGCACTTCGAGGTGCATGCAGAATATACATTAAAGAAAAGATTCCTGAATGGACTAATTCTGGCATGATACCTACGAATGTTCCAGCCATGAATGAGGACAGTGTTGGTCATGTTGATAGCGATGATCTATTACAAATTTTGTCCCAATTGCTTAAAAAAGAGCCTGCATTGCTAACTGCTTCACCAGTAAGTAAATCAACTGAGAATAGAAACCATAAACACAACAGGAATTCAAAGGCTTCCATTGCAAAGCGCCACAGGAAAGGATCACCTACACGGGTGCTAAGATCAAGCAAAAGGGTGCAGAAGGTGTCTGCCCCTAGTCTGTCACACCAAAGACCTCAAAATGTTCTGTCGTGGTTGATTGATAACAGCGTGGTGATGCCAAGATGTAAGGTCTATTACTGGGCAGAAGGAAGAAGGAACCCTAATGTGGCTGAGGGGAGGATAACTTATGATGGAATCAAGTGTAGCTGTTGCCAGCAAATATATGGTCTTGGCGGCTTTATAAATCATGTTGGTGGGAGTAGTGACTGCAGGCCTTCTGCTAGTATCTTTTTGAAGGATGGTAGGTCACTCTTAGATTGCATGATAAAAGTGATGCATGATCATAGAACAAGGGGATATATGAACAGACCATGCAAAGTTCTGTGTAAAGGCGAAAATGACAACATTTGTTCTGTCTGTCAATTTGGCGGGGAGCTTATTTTATGTGACAGCTGTCCATCTGCATTTCATGGGACATGTCTTGGTTTGGAGGATATCCCTGATGGTAACTGGTATTGTTCATCATGTCATTGCGGGATTTGCGGCCAAATCAAAACAGAAAAGACTGAGAATGCAATTGCTCTTACTTGCATTCAATGTGAACATAAATATCACGTTGGATGCTTGAAAAATAGAGAACAAATTGAGTTAAGAAGATCTAAGGAAAATTGGTTGTGTGGAACAGAGTGTCAACAGATACATACAGGCCTCCAAAGTCTATTAGGAAAGCCAATTATAGTGGGTTCGAACAATCTAACTTGGACATTGGTGAAGTTTATGAGTCATGATGTTGGTAGTACTAAGAATGACTTGGCAGAGAAATACAGCAAACTCAGTGTTGCACTTTCGGTGATGCATGAGTGTTTTGAGCCCCTAAAGAACCCTCTCACTAATAGAGATATCATTGATGATGTTATATTCAACACTAGGTCATATCTTAATCGATTGAATTTCCGGGGTTTCTACACTGTACTTCTGGAGCAAAATGAAGAATTGATTAGTGTGGCAACTATTAGGGTATTTGGACGGAAAGTAGCAGAGGTACCGCTTATAGGTACCAGAATACAATATCGTCGACTTGGAATGTGTCGCATTTTAATGAATGAACTTGAGAAGAGGCTCATGCAACTGGGAGTGGAGAGGCTAGTCTTGCCTGCTGTTCCTGATGTGCTACAAACATGGACCAATTCTTTTGGTTTTTCACAGATGACAAATTTTGAGAGGTCACAGTTCTTGGACTTTGCTTTCCTAGATTTTCAGGAAACCGTCATGTGCCAGAAGCTGTTGACAAGGATTCCATCCCCCGAATCGGGCTTAACAAGAGAGACACAACCAAAACCACATGATGTTTTCAGTCTCAAATGTAAAATTGAGTTTGACAAGTCCAGTTCAGCATCTGAAGTGGACCAAGCTGAAGAGATTGACAAAAGTAGGATGGATCTACAAGTGGTAGAGGGTGTCCCAACTCTGCCTAATTCCTGA 3513 0.4264 MRHSQFSTMSLNHSPMDVDGENSYGSTKRRKGSRKRKLLVNERVEVKSLEEGFQGSWHPGTVVRCERQKRHVKYDNILDDDGSKYLVDVVCVSPVLDGLGTSSDCSSNERGFIRPLPPPLAFGERDLPFGLCVDVNYQEAWWEGVIFDHCNGMEERSVLFPDLGDEIKVGIHQLRITQDWDEATENWEPRGKWVFLEVIEEYEKESVVAISLKQVWYDVRATNEFDNIKHWTCNVKELWRDLVNEVVGDYYVLTLEQVFPALNLPEDFLKETPELKSVEPTDNIHCDAGHSNVFGSDIGASDSPMENGNAPNLLDSDKKCGGIIPLQEEYDKDPLVDGASEKEIILQEEPVSPVQEIMPEAGEVMPGSSCCGKKRKRRRSASIHWKPLELTKVEFCPDVINEYLLGCGSKTIRELLKTKVRKHLAYLGWKIEWAEDKYFPGRGRHRYKSPDAQDQKVYTSIIQVLTHLQMESNLNNVQQPQIDHDRMHSTNDTNLSHLLSDQPPNAQDVDVCPPNGKRSRAKVEVEPEFCPQAVLKYYLNASKKHWVDKGKWRLKAKKHLLAEGWTFDYPTKKRRTTLYMSPRNQWLGALRGACRIYIKEKIPEWTNSGMIPTNVPAMNEDSVGHVDSDDLLQILSQLLKKEPALLTASPVSKSTENRNHKHNRNSKASIAKRHRKGSPTRVLRSSKRVQKVSAPSLSHQRPQNVLSWLIDNSVVMPRCKVYYWAEGRRNPNVAEGRITYDGIKCSCCQQIYGLGGFINHVGGSSDCRPSASIFLKDGRSLLDCMIKVMHDHRTRGYMNRPCKVLCKGENDNICSVCQFGGELILCDSCPSAFHGTCLGLEDIPDGNWYCSSCHCGICGQIKTEKTENAIALTCIQCEHKYHVGCLKNREQIELRRSKENWLCGTECQQIHTGLQSLLGKPIIVGSNNLTWTLVKFMSHDVGSTKNDLAEKYSKLSVALSVMHECFEPLKNPLTNRDIIDDVIFNTRSYLNRLNFRGFYTVLLEQNEELISVATIRVFGRKVAEVPLIGTRIQYRRLGMCRILMNELEKRLMQLGVERLVLPAVPDVLQTWTNSFGFSQMTNFERSQFLDFAFLDFQETVMCQKLLTRIPSPESGLTRETQPKPHDVFSLKCKIEFDKSSSASEVDQAEEIDKSRMDLQVVEGVPTLPNS 1170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01565 1170 CDD PHD1_AIRE 814 853 - -
Pumo9g01565 1170 ProSiteProfiles Zinc finger PHD-type profile. 811 856 IPR019787 -
Pumo9g01565 1170 MobiDBLite consensus disorder prediction 664 682 - -
Pumo9g01565 1170 PANTHER PHD FINGER PROTEIN 12 525 1148 IPR042163 GO:0003714|GO:0045892
Pumo9g01565 1170 Pfam PHD-finger 813 855 IPR019787 -
Pumo9g01565 1170 Gene3D - 938 1110 - -
Pumo9g01565 1170 MobiDBLite consensus disorder prediction 1 21 - -
Pumo9g01565 1170 MobiDBLite consensus disorder prediction 683 697 - -
Pumo9g01565 1170 SUPERFAMILY FYVE/PHD zinc finger 809 860 IPR011011 -
Pumo9g01565 1170 CDD Tudor_Agenet_AtDUF_rpt1_3 40 118 - -
Pumo9g01565 1170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 805 855 IPR013083 -
Pumo9g01565 1170 MobiDBLite consensus disorder prediction 1 36 - -
Pumo9g01565 1170 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 996 1086 IPR016181 -
Pumo9g01565 1170 CDD NAT_SF 1001 1061 - -
Pumo9g01565 1170 SMART PHD_3 813 854 IPR001965 -
Pumo9g01565 1170 SMART PHD_3 855 907 IPR001965 -
Pumo9g01565 1170 MobiDBLite consensus disorder prediction 646 697 - -
Pumo9g01565 1170 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 961 1106 IPR000182 GO:0016747
Pumo9g01565 1170 SMART agenet_At_2 36 100 IPR014002 -
Pumo9g01565 1170 SMART agenet_At_2 125 182 IPR014002 -
Pumo9g01565 1170 MobiDBLite consensus disorder prediction 484 507 - -
Pumo9g01565 1170 Pfam Tify domain binding domain 736 787 IPR032308 -
Pumo9g01565 1170 Pfam Agenet domain 42 118 IPR008395 -
Pumo9g01565 1170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 856 912 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01565 Pumo-Chr9 43732196 43739368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01565 38 453 PHD Transcription Factor Family AT5G58610 37.123 1.00e-67 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo9g01565 Agenet 1.7e-16 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01565 - - gmx:102661511 1877.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01565 9 43732196 43739368 Pumo9g01565 9 43732196 43739368 ECH
Pumo1g00626 1 9532459 9534158 Pumo9g01565 9 43732196 43739368 PCT