Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01554 ATGTGCGGTGTTTCCAAGGGGAAACCTTCTCAAATTGGTTTGGTCATGGAGGAGTATGGAAAAGAAGGGATGGATCATAAAATTTCAGCTTTGCTTGAGTTTTCAGCTGCGGATGATCTGATTAGTTTCATAGATGCGGTTGAAAAGGAGGGTCACGATGTTGATGGGGTAGGGTTGTGGTATGGAAGGCGTGTTGGCTCGAAGAAAATAGGTTATGAGGAGAGGACACCTCTCATGGTTGCTTCCATGTTTGGAAGCCTTGGTGTATCAACTTATATTCTTGGAACGGCTCGTGTTGATGTTAATCGGGCTAGTAGCTCAGATGGGGCTACTGCTCTTCATTGTGCTGTTGCTGGGGGTTCTGTGGCTTCTGTTGAGGTGGTCAAGCTTTTGCTTGATGCATCTGCTGATGTTAATGCTGTTGATGGCAACGGTAACCGGCCAATTGACTTGATTGTCTCTGTGGCCAATTCTATCTTCAATCAAAGGACAAGGGTGCTACAGGCCCTCCTGGAGGGTACAAGTGATGCTGACCAGGCATGTCTTGCACTTCCAGAAGTGATTGATCAAATTGAGGAACAAAGGCAAGATATGAACACACCACGTGTTTCGAAAGATTATCCCATTGATCTCTCCCTTCCAGACATAAAGAATGGGATATATGGTACTGATGAGTTTAGGATGTATACATTCAAAGTGAAGCCTTGTTCGAGGGCGTATTCTCATGATTGGACCGAGTGCCCCTTTGTTCATCCAGGGGAGAACGCAAGGCGGCGTGATCCAAGGAAATATCATTACAGCTGTGTCCCTTGTCCCGAGTTTCGGAAGGGATCTTGCAGCAAGGGCGATGCCTGTGAGTATGCACATGGTATTTTTGAGTGCTGGCTTCACCCTGCCCAGTACCGGACTCGGCTTTGCAAGGATGAGAGTGGATGCACAAGGAGAGTTTGCTTCTTTGCTCACAGGCCTGAGGAGCTTCGCCCCTTGTATGCTTCTACTGGTTCTGCTATTCCTTCTCCCAGGTCCTATTCTGCTGGTGCTTCTGCATTGGAGATGGGTTCAGTTAGCCCAATTGCACTTGGTTCTCCATCTGTCTTGATGCCACCTGCTTCAACTCCACCTTTGACTCCTTCTGGAGCATCTTCTCCAATTTCTGGATCCATGTGGTCTAATATTTCGGTCCCTACCCTGCAGCTGCCCAAAAGCAGATTGAAGACTGCATCTACTGCAAGAGGCATTGATTTAGATGTTGAACTTCTTGGACTTGAAACTCATCGGCGTAGACAGCAGCTAATGATGGATGAGATATCTGGTCTTTCCTCTCCCAACTGGAAAAATTCCATGCCTAATAGTCCATCTTTCCGTGTTCCTTTGAATGATCACACTGGGGAATTAAATAGGCTTTCAGGGGTGAAGCCTGCTAACCTTGAAGATATGTTTGGATCACTCGATCCATCAATTTTGTCTAAATTCCATGGAATCTCACTTGATGTTGCAGGATCTCAGTTACAATCTCCAACTGGAATCCAGATGCGCCAGAATGTGAACCAGCAGCTAGGAGGCTATTCATCCAGCCTCTCCACTTCAAATGTGATTGGATCGCGGTCCTTCAGGCTTGATCCATCCAGTGAAGCAGCCACAGTGGCCTTGAATCCAAGAGCTGCTGCCTTTGCAAAGCGGAGCCAGAGCTTTATCGAGCGCAGCGTGGTGAATCATCATTCTGAGCTTCCTTCTCCAAAGCCCTCTACCTTCTCTAACTGGGGCTCACCTGGTGGAAAATTAGATTGGGCCATAGATGGAAATGAGCTGAACAAGCTGAGGAAATCTGCTTCCTTTGGATTTCGAAGCAGCAGTAGTCCTCTAACAAAGGCTTCAACCAAAGCGCCAGCAAATGTTGATGATGAGCCAGATGTGTCATGGGTTAACTCACTTGTGAAGGATGCTCCACCGGAATCCGGTGAATATAATGTTGAAGATCAGCTGAAACAACTGCAATGCCACAACGGAACTGATGCGATTCCAGCATGGTTGGAGCAATTGTACTTGGATCAGGAGCAAATGGTGGCGTGA 2070 0.472 MCGVSKGKPSQIGLVMEEYGKEGMDHKISALLEFSAADDLISFIDAVEKEGHDVDGVGLWYGRRVGSKKIGYEERTPLMVASMFGSLGVSTYILGTARVDVNRASSSDGATALHCAVAGGSVASVEVVKLLLDASADVNAVDGNGNRPIDLIVSVANSIFNQRTRVLQALLEGTSDADQACLALPEVIDQIEEQRQDMNTPRVSKDYPIDLSLPDIKNGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDESGCTRRVCFFAHRPEELRPLYASTGSAIPSPRSYSAGASALEMGSVSPIALGSPSVLMPPASTPPLTPSGASSPISGSMWSNISVPTLQLPKSRLKTASTARGIDLDVELLGLETHRRRQQLMMDEISGLSSPNWKNSMPNSPSFRVPLNDHTGELNRLSGVKPANLEDMFGSLDPSILSKFHGISLDVAGSQLQSPTGIQMRQNVNQQLGGYSSSLSTSNVIGSRSFRLDPSSEAATVALNPRAAAFAKRSQSFIERSVVNHHSELPSPKPSTFSNWGSPGGKLDWAIDGNELNKLRKSASFGFRSSSSPLTKASTKAPANVDDEPDVSWVNSLVKDAPPESGEYNVEDQLKQLQCHNGTDAIPAWLEQLYLDQEQMVA 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01554 689 ProSiteProfiles Ankyrin repeat profile. 108 143 IPR002110 GO:0005515
Pumo9g01554 689 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 270 290 IPR000571 GO:0046872
Pumo9g01554 689 ProSiteProfiles Zinc finger C3H1-type profile. 270 292 IPR000571 GO:0046872
Pumo9g01554 689 ProSiteProfiles Ankyrin repeat region circular profile. 108 142 - -
Pumo9g01554 689 SUPERFAMILY Ankyrin repeat 70 172 IPR036770 -
Pumo9g01554 689 SMART c3hfinal6 265 291 IPR000571 GO:0046872
Pumo9g01554 689 SMART c3hfinal6 300 323 IPR000571 GO:0046872
Pumo9g01554 689 Gene3D - 22 180 IPR036770 -
Pumo9g01554 689 PANTHER UNKEMPT FAMILY MEMBER 33 648 IPR045234 -
Pumo9g01554 689 FunFam Zinc finger CCCH domain-containing protein 66 223 291 - -
Pumo9g01554 689 Gene3D - 266 328 - -
Pumo9g01554 689 SMART ANK_2a 108 140 IPR002110 GO:0005515
Pumo9g01554 689 SMART ANK_2a 73 103 IPR002110 GO:0005515
Pumo9g01554 689 Pfam Ankyrin repeats (3 copies) 66 142 IPR002110 GO:0005515
Pumo9g01554 689 MobiDBLite consensus disorder prediction 615 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01554 Pumo-Chr9 43641666 43644789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01554 25 684 C2H2 Transcription Factor Family AT5G12850 39.360 2.63e-142 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo9g01554 Ank_2 5e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01554 - - gmx:100819521 1275.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01554 9 43641666 43644789 Pumo9g01554 9 43641666 43644789 ECH