Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01553 ATGAATGAAAATACGTCACACCAAATTGCTAGATCTTCCTGCTCTGGTTCAAATTTGGAAGGGAAATTTGATTTAGCAGATTTCAAGTCTCTTAATCGACTTCTCACTGAAAAGGTTGGCTGGCAGGATCAAGCCGTATGTGCTATCAGTCAAACATTGTCCCTTTGTAAATCTGGTGCAGGAAAGCGTAGAGGCTCACATGGTAGAGCAGACATATGGTTGGCTTTCCTTGGACCAGATAGATTTGGCAAAAGGAAAATTGCTTCAGTTCTTGCAGATACTATATTTGGAAACTCTGAAAGCCTAATCTCTGTGGATCTGAGCTTCCAGGATGGTTTTTACCCATTGAACTCGGTTTTTGAATGCCAAAAATCACACTGTTATGATGTGCTTAGGAGGAAGACAATTGTGGACTATATTGCTGGGGAGTTGAGTAAAAAACCTCATTCTGTTGTCTTTCTTGAAAATGTAGATAAAGCCGATTTTTTGGTGCAGAGAAGTTTGTTGCAGGCAGTAAAAACAGGCAAATTTCCAGATTCGCATGGAAGGGCAATTAGCATCAATAACACAATGTTTCTATTAACCTCAACTGTTTGTAAAGGTAATAGCTCTTTTGTTTCAGAGGAGTCTAAGATGTTTTCTGAGGAAAGAATCCTTGAAGCCAAAAGATGTCAAATGCAATTGTTACTTGGACATGCTTCTGAAGATGCCAAAAGAATTGGTAGCACAAATGTTAAGGTTGTAGCCAGAAAAGGGTTTTCCAAATCATCATCTCTGAACAAAAGAAAGCAGGCTGATATTAGTGACTCCAAGGAGGGAGCAACAAGCAAGATGCAGACACGAGACAGCGAGGCATCTCGATCCTATCTTGATCTAAATTTGCCTGTAGAGGAGGGTGAAGAGGGTGTCAATGACAATGACCATGAAAGTGAATCCATAACAGAAACCACAGATGCCTGGTTGAGTGATTTCTTTGATCAAATTGATGAGAGAGTGGTTTTTAAGCCATTCAATTTTGATGAGCTTGCTGAGCAAGTATCAAAAAGAATTGGCATGCTATTTCAAAGGACATTCGGTTCAGAGCTTCAGCTGGAAATTGATTATGAGGTAATAACACACATACTTGCAGCTGCTTGGTTATCAGACAAGAAAAATGCTGTGGAGGATTGGGTTGAACATGTTCTTGGCAAAGGCTTCTTTGAAGCTCAGCAGTTGTACCTTCCTGCAGCTCAGTATGTAGTGAAACTGGTAAATTGTGAATCCATTTTTGTGGAAGAGCAAGCCCCTGGTGTGTGCCTTCCAGCTAGAATTAACCTGGACTAA 1323 0.4044 MNENTSHQIARSSCSGSNLEGKFDLADFKSLNRLLTEKVGWQDQAVCAISQTLSLCKSGAGKRRGSHGRADIWLAFLGPDRFGKRKIASVLADTIFGNSESLISVDLSFQDGFYPLNSVFECQKSHCYDVLRRKTIVDYIAGELSKKPHSVVFLENVDKADFLVQRSLLQAVKTGKFPDSHGRAISINNTMFLLTSTVCKGNSSFVSEESKMFSEERILEAKRCQMQLLLGHASEDAKRIGSTNVKVVARKGFSKSSSLNKRKQADISDSKEGATSKMQTRDSEASRSYLDLNLPVEEGEEGVNDNDHESESITETTDAWLSDFFDQIDERVVFKPFNFDELAEQVSKRIGMLFQRTFGSELQLEIDYEVITHILAAAWLSDKKNAVEDWVEHVLGKGFFEAQQLYLPAAQYVVKLVNCESIFVEEQAPGVCLPARINLD 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01553 440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 378 IPR027417 -
Pumo9g01553 440 MobiDBLite consensus disorder prediction 262 278 - -
Pumo9g01553 440 MobiDBLite consensus disorder prediction 259 286 - -
Pumo9g01553 440 CDD RecA-like_ClpB_Hsp104-like 27 196 - -
Pumo9g01553 440 Pfam AAA domain (Cdc48 subfamily) 74 208 IPR003959 GO:0005524|GO:0016887
Pumo9g01553 440 Gene3D - 11 336 IPR027417 -
Pumo9g01553 440 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 9 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01553 Pumo-Chr9 43619834 43621156 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01553 - - gmx:100818456 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01553 9 43619834 43621156 Pumo9g01553 9 43619834 43621156 ECH
Pumo9g01553 9 43619834 43621156 Pumo1g00264 1 4228464 4233634 ECH
Pumo1g00639 1 9685657 9687012 Pumo9g01553 9 43619834 43621156 ECH
Pumo1g00264 1 4228464 4233634 Pumo9g01553 9 43619834 43621156 ECH
Pumo3g03038 3 55134718 55139571 Pumo9g01553 9 43619834 43621156 ECH
Pumo1g00639 1 9685657 9687012 Pumo9g01553 9 43619834 43621156 PCT