Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01538 ATGAACCCGCTAACGCTAGTGAAGCGCACTCAGAACATCAATGCCAGAGAAGCAGCACTCGGCATCGGCGAGGATGCCTCGTGGCACACCAAGTACAAGGATTCCGCTTACGTCTTCGTCGGTGGCATTCCCTTCGATCTCACCGAGGGTGACCTTCTTGCCGTTTTCGCTCAGTACGGTGAGGTTGTTGATGTTAATCTCGTTAGGGACAAAGGCACCGGAAAATCCAAGGGTTTTGCGTTCCTTGCGTATGAGGATCAGAGAAGCACGAATCTTGCTGTAGATAATTTGAATGGGGCACAGGTTTTGGGTAGAATTATTAGGGTGGACCATGTTGATAAGTATAAGAAGAAGGAGGAGGAGGATGAAGAGACAGAGCGGCAGATGAGGGAGGCACGTGGCGTTTGCCGTGCTTTCCAAAGAGGTGAATGTACTCGTGGAGCTAGCTGCAAGTTTTCTCATGATGAGCAAAGAGCTGCAAATACAGGTTGGGGTCGTGATGAAGACAATCCAAAATGGGGTCACGACAAATTTGAGGGTCCCAAAAAAGAGAGAAGATCTGGCAACAATCAATCAAATTATATTCCAGAACCTAGAGACAGAGATTCACGTTCAAGGGCCCGTGACAATGATGCTGAATTAGACAACCAACCTAAGAGAAGTGATAGAAGAGAGACAACGAAGCGGTGGCATGATGATGATGATGATAAATATGAGGGAAGAGAAAATAACTATAGAAGAGAAGAAAAGAGATCAAGAAGGCATGAAGATGATGGCAAATTTGAGGGGAGAGAAAATAACAGTAGAAGAGAAGAAAAGAGATCAAGAAGGCATGAAGATGATGACAAATTTGAGGGGAGCGAAAATAACAGTAGAAGAGAAGAAAGGAGATCAAGAAGGCATGAAGATGATGAATTTGAACTTAAGGCAAGAGAAGATCGATATAGGAGAGAAGAAAAAAGATCAAGGGATGATTACGATGGTGTGGAGCCTGAGCCAAAAGATCACCGCAGAAGGGAAGACAAGAAGTCAATAAAGCCAGATGATGTTGAGTTTGAACCCAAGTCGAGAGATTCTGATATAAGGGAAGATAAAGATACCGGAGGAAGGATGATAATGATTTTGTAA 1128 0.4415 MNPLTLVKRTQNINAREAALGIGEDASWHTKYKDSAYVFVGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTNLAVDNLNGAQVLGRIIRVDHVDKYKKKEEEDEETERQMREARGVCRAFQRGECTRGASCKFSHDEQRAANTGWGRDEDNPKWGHDKFEGPKKERRSGNNQSNYIPEPRDRDSRSRARDNDAELDNQPKRSDRRETTKRWHDDDDDKYEGRENNYRREEKRSRRHEDDGKFEGRENNSRREEKRSRRHEDDDKFEGSENNSRREERRSRRHEDDEFELKAREDRYRREEKRSRDDYDGVEPEPKDHRRREDKKSIKPDDVEFEPKSRDSDIREDKDTGGRMIMIL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01538 375 SUPERFAMILY CCCH zinc finger 132 155 IPR036855 GO:0046872
Pumo9g01538 375 Gene3D - 8 129 IPR012677 -
Pumo9g01538 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Pumo9g01538 375 FunFam Uncharacterized protein 127 204 - -
Pumo9g01538 375 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 155 IPR000571 GO:0046872
Pumo9g01538 375 FunFam Zinc finger CCCH domain-containing protein 25 26 130 - -
Pumo9g01538 375 MobiDBLite consensus disorder prediction 197 369 - -
Pumo9g01538 375 Gene3D - 130 202 - -
Pumo9g01538 375 MobiDBLite consensus disorder prediction 155 375 - -
Pumo9g01538 375 Coils Coil 115 135 - -
Pumo9g01538 375 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Pumo9g01538 375 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 270 - -
Pumo9g01538 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
Pumo9g01538 375 MobiDBLite consensus disorder prediction 160 186 - -
Pumo9g01538 375 SUPERFAMILY RNA-binding domain, RBD 27 116 IPR035979 GO:0003676
Pumo9g01538 375 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Pumo9g01538 375 SMART rrm1_1 37 110 IPR000504 GO:0003723
Pumo9g01538 375 CDD RRM_ist3_like 27 113 IPR045844 GO:0000398|GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01538 Pumo-Chr9 43413804 43418050 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01538 35 109 Eukaryotic Initiation Factors Gene Family AT2G36660 29.333 7.37e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01538 K13107 - gmx:100792988 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01538 9 43413804 43418050 Pumo9g01538 9 43413804 43418050 ECH