Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01532 ATGGATAACATGGTAAGAGGAGGAAGTCATGGTGGAAATGGCTTTCAAATTTATGGGTGTGAAGTTATAAACGCTAGCAACAGCCCTCCTTTGACAGCCATAGGCATAGATCATAGGTTCTTATGTGGCCACTTCCCTCACCAGCAACAACATGCAAGGAACAATGATGGAAGTGTTTTTGGTGAGGAGGGTTTTAATAAGTGGACACACATCAACCAAACCCCTACATTGTGCCTGAAAGATATGCAAGTTTCAGGAAAGAATGCGAAAGTGGTGGGAAGGAGAAGCAAGAAACAGTCTTCTGCTGTGTGTTGGATCAAAGGACAGTGGAAAAAAGAAGAGGACAGGAAACTGATAGGGTTGGTGAAGCAATATGGTGAAAGAAAATGGGTTGAAATAGCTGAGAAGTTGGAAGGAAGGGTTGGCAAGCAGTGTCGAGAAAGATGGAATAATCATTTGCGTCCTGATATTAAGAAAGATAGTTGGAGTGAAGAAGAAGAGAGGATACTAGTGGACACCCATGCGAGACTCGGAAACCGTTGGTGCGAGATAGCAAAACGCATTCCGGGAAGATCAGAGAATGCCATAAAGAACCTTTGGAATGCCACTATAAGGAGACAGAACTCAAAGAGAAAGAACAAGAAGACAAAGAACTCTAATGGGAAGAAGCCACATTCCTCTATACTTGAAGACTACATCAGAAGCAAGACTCAAATAATTAGCAACCCTACACCTGGCATCATCACTGCCACAGATACCTCCCACACAACACTCTCACAGGACAATGCATCAAACCCTGTGCTCTATGAACCTTTTGCTAATGAACTACTCTTCATGCAACAAATTTTCGAGGAGAATGTTGAAGCCTCTAAGGACTCTACTAAGATGTCTCCAACCTCGTACTTGGATTATTATCAAATGAATGTTGATGATGTGGGTGAGTGTGGATTTGTGTATTCCCTCCAACACCCAGATAATACTATCATGCACTTGAATGATCATAGTCTCTTCCCTAGAGAGACTCACACTCACCCTACCCCCTTAAATTACCTTCCTTCGGATCTATACCTCTCTCACTTGTTCAACGTAGCACCCGGTTATGGGAATCAAAATCTGAACATGGATTTTCGGCATCATGGTCGTTCAGAAGTTAAAGGAGAGATGGATTTGATAGAGTTTGTTTCTTCTTAA 1191 0.424 MDNMVRGGSHGGNGFQIYGCEVINASNSPPLTAIGIDHRFLCGHFPHQQQHARNNDGSVFGEEGFNKWTHINQTPTLCLKDMQVSGKNAKVVGRRSKKQSSAVCWIKGQWKKEEDRKLIGLVKQYGERKWVEIAEKLEGRVGKQCRERWNNHLRPDIKKDSWSEEEERILVDTHARLGNRWCEIAKRIPGRSENAIKNLWNATIRRQNSKRKNKKTKNSNGKKPHSSILEDYIRSKTQIISNPTPGIITATDTSHTTLSQDNASNPVLYEPFANELLFMQQIFEENVEASKDSTKMSPTSYLDYYQMNVDDVGECGFVYSLQHPDNTIMHLNDHSLFPRETHTHPTPLNYLPSDLYLSHLFNVAPGYGNQNLNMDFRHHGRSEVKGEMDLIEFVSS 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01532 396 Pfam Myb-like DNA-binding domain 110 167 - -
Pumo9g01532 396 CDD SANT 110 153 IPR001005 -
Pumo9g01532 396 Gene3D - 160 228 - -
Pumo9g01532 396 CDD SANT 161 201 IPR001005 -
Pumo9g01532 396 MobiDBLite consensus disorder prediction 203 228 - -
Pumo9g01532 396 FunFam Transcriptional activator Myb isoform A 106 159 - -
Pumo9g01532 396 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 157 IPR017930 -
Pumo9g01532 396 SMART sant 106 155 IPR001005 -
Pumo9g01532 396 SMART sant 158 206 IPR001005 -
Pumo9g01532 396 ProSiteProfiles Myb-like domain profile. 154 204 IPR001005 -
Pumo9g01532 396 SUPERFAMILY Homeodomain-like 106 200 IPR009057 -
Pumo9g01532 396 ProSiteProfiles Myb-like domain profile. 107 153 IPR001005 -
Pumo9g01532 396 Gene3D - 106 158 - -
Pumo9g01532 396 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 158 208 IPR017930 -
Pumo9g01532 396 PANTHER MYB PROTEIN-RELATED 98 225 - -
Pumo9g01532 396 MobiDBLite consensus disorder prediction 207 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01532 Pumo-Chr9 43367464 43369201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01532 28 395 MYB Transcription Factor Family AT5G58850 37.269 1.04e-66 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo9g01532 Myb_DNA-bind_6 3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01532 K09422 - gmx:102666818 573.548