Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01524 ATGAAGTGGGAAAGTATAACCCTCTCTTCTCCTACACCTTGTACTCCCAACTCCACCACCAACTGGTTGGTGGAAGATAGCAGGAGCACAAAATGGACCCCTGAAGAGAACAAGCTCTTTGAAAATGCTCTTGCAGTGCATGATAAGGACACCCCAGATCGGTGGCACAAAGTGGCTGAAATGATTCCTGGAAAGACAGTGGTTGATGTGATAAGGCAGTACAAGGAGTTGGAAGTGGATGTTAGCAATATAGAAGCTGGTTTGATCCCAGTTCCTGGCTATAGCAGTACTGCTACCTCACCCTTCACCTTAGATTGGGTGAACACTCCTGGTTATGATGGGTTTAAAGGAAGTGGAAAGAGGTCTTCCTCAGTGAGACCTCATGAGCATGAAAGGAAGAAAGGAGTGCCTTGGACTGAAGAGGAACATAAATTGTTTCTACTGGGTCTGAAGAAGTATGGGAAAGGTGATTGGAGAAATATTTCTCGCAATTTTGTGATTACTAGAACTCCAACACAGGTTGCTAGCCATGCTCAGAAGTACTTCATAAGGCAACTTTCAGGAGGCAAAGACAAGAGGAGGGCTAGCATACATGACATAACAACAGTGAATCTCACAGAAACCATCACAACTTCTTCTTCAGAAGACACCAATAGATCCACTTCACCACATGTGCTCTCACAGCAGCAGCCAAATTCTACTCCTACCACTCCCAGAACTCATTTTCAGTGGAGTAACCAGTCAAACACAGGAGTAGCTATGACTCTCAACCCTGCTCATGAAAGAGTCTTCATGTCTCCTTATGGTGCTAACTCCTTTGGGGTTAAAATTGAGGGACAGAGTCTGCAAAAGAGTGCTCTTCATGAGTCTTTTTACTTGGGACCTCAGACACAGAACATGGTTTTCCAAATGCAACAGTCCTCACAACACTAG 933 0.4469 MKWESITLSSPTPCTPNSTTNWLVEDSRSTKWTPEENKLFENALAVHDKDTPDRWHKVAEMIPGKTVVDVIRQYKELEVDVSNIEAGLIPVPGYSSTATSPFTLDWVNTPGYDGFKGSGKRSSSVRPHEHERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETITTSSSEDTNRSTSPHVLSQQQPNSTPTTPRTHFQWSNQSNTGVAMTLNPAHERVFMSPYGANSFGVKIEGQSLQKSALHESFYLGPQTQNMVFQMQQSSQH 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01524 310 CDD SANT 137 182 IPR001005 -
Pumo9g01524 310 Gene3D - 136 186 - -
Pumo9g01524 310 SUPERFAMILY Homeodomain-like 30 82 IPR009057 -
Pumo9g01524 310 ProSiteProfiles SANT domain profile. 27 82 IPR017884 -
Pumo9g01524 310 ProSiteProfiles Myb-like domain profile. 24 78 IPR001005 -
Pumo9g01524 310 FunFam transcription factor MYB1R1 136 187 - -
Pumo9g01524 310 ProSiteProfiles SANT domain profile. 138 186 IPR017884 -
Pumo9g01524 310 NCBIfam myb-like DNA-binding domain, SHAQKYF class 133 185 IPR006447 GO:0003677
Pumo9g01524 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 186 IPR017930 -
Pumo9g01524 310 ProSiteProfiles Myb-like domain profile. 130 182 IPR001005 -
Pumo9g01524 310 SUPERFAMILY Homeodomain-like 132 185 IPR009057 -
Pumo9g01524 310 FunFam Transcription factor SRM1 24 91 - -
Pumo9g01524 310 SMART sant 28 80 IPR001005 -
Pumo9g01524 310 SMART sant 134 184 IPR001005 -
Pumo9g01524 310 MobiDBLite consensus disorder prediction 208 247 - -
Pumo9g01524 310 Pfam Myb-like DNA-binding domain 137 182 IPR001005 -
Pumo9g01524 310 Pfam Myb-like DNA-binding domain 31 75 IPR001005 -
Pumo9g01524 310 CDD SANT 31 77 IPR001005 -
Pumo9g01524 310 Gene3D - 24 91 - -
Pumo9g01524 310 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 27 258 IPR043363 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01524 Pumo-Chr9 43259989 43262470 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo9g01524 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01524 - - gmx:778034 567.385