Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01516 ATGAAGAAAACACCACCCCCCAATTTGCATCAATCTAGCCAAAGAAAACAGAATGCTAATTTCCAACTTAATGATGCAAAGAGGCACAATAATCCTAAGACTAGTTCTGCACTGAGATCTTTCAAGTATGCTGTCAAGAAATGTGCAGCTGTTTTTTCATTGTTTCTCCATGGCAAAAGAAAATCAGCCTCATATGTTGTTGGAGATGATGGGAGAAAGAATACATCCAAAAATAGAGGGGTGGTATCATCATCAACTGATTTATCATCTGAGAGTACCAAGAACTCATCAAAATGGAAGTTTTCTTATTCCTACGCATCATCCAGCACTGCAAGTGGACAACTTGGAATTGGCAACTTCTCCTTTGAAGAAATTTACAAGTCAACTGCAAAATTCTCTCCAGCTAATGAAATTGGGCAAGGTGGCTTTGGAACAGTCTACAAGGGAAAGCTTAATGATGGATCTATTGTCGCTGTGAAGCGTGCCAAGAAGGAAGTGATACACAATCACTTACATGAGTTCAAGAATGAAATATACACCCTGTCGCAAATTGAGCATCGGAATCTTGTGAGGTTGTATGGATATTTGGAGCATGGAGTTGAGAAGATTATTGTTGTTGAATACGTTGGTAATGGTAACCTTAGAGAACATCTAGATGGTATTCGGGGAGAAGGACTAGAAATTGGGGAGCGTCTAGATATAGCAATTGATGTAGCTCATGCAATAACTTACCTTCATATGTACACAGATAATCCAATTATCCATAGAGACATCAAAGCATCAAACATCTTAATCACTGAGAATCTAAAGGCCAAAGTTGCAGATTTTGGTTTTGCACGGTTGTCTGATGATCCTACTGCAACTCATATTTCAACTCAAGTAAAAGGAACAGCTGGATACATGGATCCTGAGTATCTTAGAACATACCAACTCACTGAAAAGAGTGATGTTTATTCCTTTGGTGTATTGCTTGTTGAAATGATGACAGGACGACATCCAATAGAACCAAAGAGACCAGTTGATGAGAGAGTGACAATCAGATGGGCAATGAAAATGCTGAAACAAGGGGATGCTGTATTTGCCATGGACCCTAGGTTGAGAAGAAATCCATCCTCCATCAAGGCAGTAAAGCAGGTTCTCAAGCTAGCTCTCCAATGCATTGCGCCTTCAAAACAATCACGGCCACCTATGAAGAATTGTGCAGAGGTTCTGTGGGACATCCGCAAAAGTTTTAGAGATGAAGCCAGTTCTGATCATCCTCCCCTTCCTTCTCACCATTCTGCAGACTTTACTCCAAGAGAAAAGAATAAGTTTGGTATTGAAGATGATGACAGCTATAAATTTGTCTCTGTACCTAATCATATTCGTTCATAA 1374 0.3974 MKKTPPPNLHQSSQRKQNANFQLNDAKRHNNPKTSSALRSFKYAVKKCAAVFSLFLHGKRKSASYVVGDDGRKNTSKNRGVVSSSTDLSSESTKNSSKWKFSYSYASSSTASGQLGIGNFSFEEIYKSTAKFSPANEIGQGGFGTVYKGKLNDGSIVAVKRAKKEVIHNHLHEFKNEIYTLSQIEHRNLVRLYGYLEHGVEKIIVVEYVGNGNLREHLDGIRGEGLEIGERLDIAIDVAHAITYLHMYTDNPIIHRDIKASNILITENLKAKVADFGFARLSDDPTATHISTQVKGTAGYMDPEYLRTYQLTEKSDVYSFGVLLVEMMTGRHPIEPKRPVDERVTIRWAMKMLKQGDAVFAMDPRLRRNPSSIKAVKQVLKLALQCIAPSKQSRPPMKNCAEVLWDIRKSFRDEASSDHPPLPSHHSADFTPREKNKFGIEDDDSYKFVSVPNHIRS 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01516 457 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 1 96 208 - -
Pumo9g01516 457 MobiDBLite consensus disorder prediction 413 438 - -
Pumo9g01516 457 Gene3D Transferase(Phosphotransferase) domain 1 209 421 - -
Pumo9g01516 457 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 109 419 - -
Pumo9g01516 457 CDD STKc_IRAK 138 404 - -
Pumo9g01516 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Pumo9g01516 457 ProSitePatterns Protein kinases ATP-binding region signature. 138 164 IPR017441 GO:0005524
Pumo9g01516 457 ProSiteProfiles Protein kinase domain profile. 132 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g01516 457 Gene3D Phosphorylase Kinase; domain 1 91 208 - -
Pumo9g01516 457 SMART serkin_6 132 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo9g01516 457 SUPERFAMILY Protein kinase-like (PK-like) 113 405 IPR011009 -
Pumo9g01516 457 Pfam Protein tyrosine and serine/threonine kinase 136 404 IPR001245 GO:0004672|GO:0006468
Pumo9g01516 457 MobiDBLite consensus disorder prediction 66 94 - -
Pumo9g01516 457 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 209 418 - -
Pumo9g01516 457 MobiDBLite consensus disorder prediction 77 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01516 Pumo-Chr9 43179988 43184301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01516 104 397 Receptor kinase-like Gene Family AT1G79620 44.518 2.95e-73 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Pumo9g01516 PK_Tyr_Ser-Thr 1.8e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01516 - - gmx:100811511 806.979