Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01510 ATGCGAGAGGGAGAGAACACAGAAACAGAATCAGAAGCAACATCGACATGGAACCTCGGAAAACACACTCAGATAATCGAACTTTCGGAGAAGCTGACGAACGGGAATCTCGGCGCCAAGATTGAGGCCGCGAGGGAGATAAGGAAGATGGTTCGGAAATCGTCGTCGTCGTCGTCGAAGACGCGTGCGAAGCTCGCCGCAGCGGGTGTGATTGAACCGCTCGTGTTGATGCTCTCTTCTTCCAACATGGATGCTCGCCAATCCTCTCTCCTCGCTCTCCTCAACCTCGCTGTTCGCAACGAACGAAACAAGGTCAAAATAGTGACAGATGGTGCAATGCCTCCACTGGTGGAGCTCCTCAAGATGCAAAATAGCGGTATACGAGAATTAGCTACAGCTGCAATCTTGACACTCTCAGCTGCTGCATCCAACAAGCCCATTATTGCTGCTTCTGGAGCCGCACCTCTCCTTGTTCAGATTCTCAAATCTGGAAGTGTACAAGGCAAAGTTGATGCTGTTACAGCCCTCCACAATCTTTCTACTAGCATCGAGAATTCCATTGAACTTCTTGATGCAAGTGCTGTTTTCCCTCTGATCAACCTCCTTAAAGAGTGCAAGAAGTATTCCAAGTTTGCAGAAAAAGCCACAGCACTGCTTGAAATCCTTTCCAACTCCGAAGAAGGACGAACGGCAATCTCAATTGCAGATGGTGGAATCTTAACGCTAGTAGAGACAGTTGAAGATGGATCACTTGTCAGCACAGAACATGCTGTTGGAACCCTGCTATCATTATGTCGAAGCTGCCGAGATAAATACCGGGAACTGATTCTCAAAGAAGGAGCGATTCCAGGTCTGTTACGTCTGACAGTGGAGGGCACAGCTGAAGCTCAAGATAGAGCACGTGTGCTTCTGGATTTGCTCAGAGATTCTCCCCCAGAAAAAAGACTAACCTCATCAGTTTTGGAGAAAATTGTTTATGACATTGCTGAACGTGTAGATGGAGCAGATAAAGCTGCTGAAACTGCCAAACGGTTATTGCAAGATATGGTTCAAAGAAGTATGGAACACAGCATGAAATGCATCCAGCATAGGGCTGCATCTTGTACTCCTTCTATTCCATCCACTTGA 1128 0.4725 MREGENTETESEATSTWNLGKHTQIIELSEKLTNGNLGAKIEAAREIRKMVRKSSSSSSKTRAKLAAAGVIEPLVLMLSSSNMDARQSSLLALLNLAVRNERNKVKIVTDGAMPPLVELLKMQNSGIRELATAAILTLSAAASNKPIIAASGAAPLLVQILKSGSVQGKVDAVTALHNLSTSIENSIELLDASAVFPLINLLKECKKYSKFAEKATALLEILSNSEEGRTAISIADGGILTLVETVEDGSLVSTEHAVGTLLSLCRSCRDKYRELILKEGAIPGLLRLTVEGTAEAQDRARVLLDLLRDSPPEKRLTSSVLEKIVYDIAERVDGADKAAETAKRLLQDMVQRSMEHSMKCIQHRAASCTPSIPST 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01510 375 Gene3D - 171 315 IPR011989 -
Pumo9g01510 375 SMART arm_5 58 98 IPR000225 GO:0005515
Pumo9g01510 375 SMART arm_5 182 224 IPR000225 GO:0005515
Pumo9g01510 375 SMART arm_5 225 266 IPR000225 GO:0005515
Pumo9g01510 375 SMART arm_5 141 181 IPR000225 GO:0005515
Pumo9g01510 375 SMART arm_5 99 140 IPR000225 GO:0005515
Pumo9g01510 375 SUPERFAMILY ARM repeat 28 323 IPR016024 -
Pumo9g01510 375 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 152 194 IPR000225 GO:0005515
Pumo9g01510 375 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 193 237 IPR000225 GO:0005515
Pumo9g01510 375 Gene3D - 24 165 IPR011989 -
Pumo9g01510 375 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 69 111 IPR000225 GO:0005515
Pumo9g01510 375 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 111 153 IPR000225 GO:0005515
Pumo9g01510 375 PANTHER U BOX DOMAIN-CONTAINING 25 309 - -
Pumo9g01510 375 Pfam Armadillo/beta-catenin-like repeat 100 139 IPR000225 GO:0005515
Pumo9g01510 375 Pfam Armadillo/beta-catenin-like repeat 144 180 IPR000225 GO:0005515
Pumo9g01510 375 FunFam U-box domain-containing protein 4 4 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01510 Pumo-Chr9 43114114 43120885 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01510 6 309 U-box Gene Family AT3G54790 36.508 1.55e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01510 K08332 - gmx:100782472 657.136