Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01496 ATGGGGCGGAGACCTGCGAGGTGTTATAGGCAAATTAAGAACAAGCCATACCCAAAGTCACGTTTCTGCCGTGGTGTTCCTGATCCCAAGATCAGAATTTATGATGTTGGTATGAAGAAGAAGGGTGTTGATGAGTTTCCTTTCTGTGTCCATCTGGTTAGTTGGGAGAAGGAAAATGTTTCAAGTGAGGCCCTGGAAGCTGCTCGTATTGCTTGCAACAAGTACATGGCCAAATTTGCCGGAAAGGATGCTTTCCACTTGAGAGTGAGGGTGCACCCATTCCATGTTCTTAGGATCAACAAGATGCTTTCGTGTGCCGGAGCTGATAGGCTCCAAACTGGAATGAGAGGTGCATTTGGAAAGCCACAGGGTACTTGTGCTAGAGTGGCTATTGGGCAGGTCCTCCTTTCTGTCCGCTGCAAGGACAGCAACAGCCATCATGCTCAGGAGGCCCTTCGCCGTGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGATTATTGTTAGCAGGAAGTGGGGCTTCACCAAGTTTAGCCGTTCTGATTATCTCAGGTTCAAGTCAGAGAACAGAATTGTGCCCGATGGCGTGAATGCCAAGCTTCTTGGATGCCATGGACCATTGGCCAACCGTGAACCTGGAAGAGCATTTTTGGATAGTGCTACTGCTTAG 666 0.485 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLANREPGRAFLDSATA 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01496 221 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Pumo9g01496 221 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Pumo9g01496 221 Gene3D Ribosomal protein L10e/L16 1 216 IPR036920 GO:0003735|GO:0005840|GO:0006412
Pumo9g01496 221 PANTHER 60S RIBOSOMAL PROTEIN L10 1 213 IPR001197 GO:0003735|GO:0005840|GO:0006412
Pumo9g01496 221 FunFam 60S ribosomal protein L10 1 206 - -
Pumo9g01496 221 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Pumo9g01496 221 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Pumo9g01496 221 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Pumo9g01496 221 NCBIfam 50S ribosomal protein L16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01496 Pumo-Chr9 42642751 42644666 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01496 1 220 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 85.455 2.11e-143 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01496 K02866 - gmx:100305619 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01496 9 42642751 42644666 Pumo10g01534 10 20298758 20301160 PCT