Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01487 ATGGGTAGGCGAAAAAGTAAACCACATCGAGCAGGTGGGATAATACTAGAGACAAATGCTGCTGCTGAGACAGAATTGGATAAACAAAATGTTGTTGAAGGAGGGAAAGAAGCAAAGGGTGATTCTGGTGGCATTGATAAACCCTATTTTGTTGAGGTTGATCGGTCTGGTTGGTTGTCGAGTAAACACCTTGATATTTCTGAGGTTGTTTTGAGGGATTTAAATTTGAGAGAAGGTTTTTCTGGTTTTGAACTGTCTGAGGATTTTTATCGGGATCAGCAGTACTTGTTAAGATTTCGGGTGTGTAATGTCACTAATGTTCTTGGTCGAATTAAATTAGGCCATTGGCCTGTGTTACCCTATACTGATATTCATCTGGAGTTTGTAAGAAGAGTTACCATTGAACATGTGGAAACATATACTGTGTTATTATCTGGTGTTTTTGATGGACCTGATGAAGGTGTTACTGGTCTTCTTCACTTGGCAAGTTTGAAGTTTGTTTCATTGAGGCCAGTTCTTGGGGTTAGGCTTTCTGAGGAACTTTCCTCTCTCAGGGTAAGGGTTGAGATACTAAAGAGCGCCTTTGATGCATGCGAGTCGCTTCTTGATAGTTCTAGACAACTATGGAAAAAGAGTATGGTGAATGTAATGTCTTGGTTACGTCCAGAAATAATGACTTTGGAAGTTAGGTATGGGTTTGGTAGCTGTATGAAAATGGAAGTTGATCCACAGACAGAGATGGCAGATGACATTTGCAAGGCCAGGAAACATGCAAGGTTTGATCCTGCAGGTTTCTATGAAGCCATTAAGCCTTCAAAATCAGAGCCAATGCTTGAAGATGACATACCAGAGTTACTTCCTAAATTGAGGCCATATCAACGGCGCGCAGCTTTCTGGATGGTAGAACGGGAGAAGGCAGTGGAAGAAAGTCAGGGTGAAAGAGAAAGGAATCAGTTTCATTCTCCATTATGTATATCTATGGATTTTCTGGACATCAGTTTTCAAATGTTTTTCAATCCATTCAGTGGAAATATTTCATTGTGCCCAGAGACTTCTTCACCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGAAAAACTGTTGAATTGCTTGCTTGCATCTTTGCTCACCGTAGATCAGCATCTGAAAGTGACATATTAATTGATTTAGAGCCCCAAGTTAATGGGGACCAAAAAGTCAATTTGAAAAGACTCAAAAGAGAGCGTGTGGAGTGCATATGTGGAGCTGTGAGCGAAAGTCTTAAATATGAAGGACTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCAGATTGTGTTGGTTATTCACCTAAAGGAAAATCTTTGAAATCAAAACAAGGATGTGAAAGAAAGACATATAAAACTACCATAGCTGAGAGGGATGGAGAATATGTATGTCAGATGTGCTCTGAACTAATACAAGCCACTGAATCTCCTATTGCCTCTGGTGCCACTCTCATTGTCTGCCCAGCTCCTATTTTGCCCCAGTGGCATGATGAAATTATACGCCATACGCATCAGGGCTCCTTGAAAACTTGTGTTTATGAAGGTGTGCGAGACACATCTTTTTCCAATACATCTCTGATGGATATCAGTGATCTTGCCAGTGCTGACATTGTATTAACTACATATGATGTGCTTAAAGAAGATTTGTCTCATGATTCTGATAGGCATGAAGGTGATCGGCACTTTCTGAGATTTCAAAAAAGGTACCCAGTTATACCAACTCCTCTTACAAGAATATACTGGTGGAGGGTTTGCTTGGATGAGGCACAAATGGTGGAGAGTAATACTACTGCTGCCACTGAAATGGCTCTAAGACTCCATTCAAAGTATCGTTGGTGCATTACTGGGACCCCAATTCAGCGAAAGCTTGATGACTTATATGGACTTCTAAGATTCCTCAAAGCTAGTCCTTTTGATAAATACAGGTGGTGGACTGATGTTATTCGAGATCCTTATGAGAAGGAAGATATGGGAGCTATGGAATTTACGCACAAAATTTTCAAACAAATCATGTGGCGTTCTTCTAAAGAACATGTTGCTGATGAGTTGGACCTTCCCTCGCAAGAGGAGTGCCTCTCTTGGCTTACCCTCTCACCAGTTGAGGAGCACTTTTACCAGAGGCAACATGAAACTTGTGTTAGAGATGCCCATGAAGTTATTGAAAGTTTGAGAAATGATATTCTTAGTAGAAAAGGCCCAGGTTCTGTCTCTTTGAATGGTTCCTCTGATCCTTTAATCACTCACACTGAGGCAGGGAAGCTACTGAATGCTTTGCTGAAGCTTCGTCAAGCTTGTTGTCATCCCCAGGTTGGAAGTTCTGGGTTGCGCTCCCTGCAGCAGTCACCTATGACCATGGAGGAAATACTAATGGTTCTTATAAGCAAGACCAAGATAGAAGGTGAGGAAGCTCTCAGGAAGTTAGTTATTGCTCTGAATGCACTTGCAGCTATTGCTGCAATACAAAAAGATTTTTCTCAAGCTACATTACTGTACAGTGAAGCTCTTACTTTGGCTGAAGAGCATTCTGAAGATTTCCGCCTGGATCCTTTGTTAAATATCCACATTCATCATAATCTTTCTGAAATACTCCCACTGGCTTCAAACTTTGCTATAATATCACCATCCAAAGGAAAGCAGTTCTCTGGAACTTCTGAATTTAAGACAACCAAAAGGCATTTAATTGTAAAGGTTGATCATTGCCATGTGAAGAGGCAAAAAATAAGTGGTTGTGATGACGTAAATGTAACAGTGCCGTTGGCAGAACCATCAGATGTTGCATTTAGCCTTTCAGAAAATGACTTAAATGAGGATCAGGAATTTGATCATTTATCAGCCATCAAATCTCTGGTAGCAGAATGTGAAGATTCAAAACAGAAATACTTATCTGTCTTCAGTTCAAAGCTATCTGCAGCCCAACAGGAGTTTCAAAATTCTTACACGCAGGTCTGTAATGCATATCGTGATAGCAGAACAGATCAAAATACATTTTGGTGGTTAGAAGCACTCCATCATGCTGAGCAGAACAAAGATTTCTCCACTGAGTTGATTAGGAAGATTGAAGAAGCCATCTCAGGAACTTCAAACAATTCAAAGTCATCAAGAATAGCTGCTCGTTTCCGAAGCATAAGCTCTCTGAAGTATCAAATTCAGACAGGTTTGGATCAGTTAGAGGCCTCTAGAAAAACGCTCCTAGATCGACTGTTAGAAATTGATCAGACAATGGAAAAACCAAAAGAAGAAGATATTGAACGTGTGGGTAAATGTCGAAATTGTCAGCCTAATTGTGATGGTCCCCCGTGCGTTTTGTGTGAACTAGATGAATTGTTTCAGGATTATGAAGCAAGACTCTTTGTTCTTAAGAATGAACGTGGAGGGATAATTTCATCTGCTGAGGAGGCAGTAGATTTTCAGAAGAAAAACTTTGCATTGAATCATTTCCTCTCAAAGCTATCACAATCTAATCACAGTTCTACAGTATCTGATATTGGTAATGAAGAATCAAAGAAAAGGAATGTTGGACAAAGAGTTGTGGTTTCAAGATCAGCATCTGAGTTGGAGCTAGTTCTTGGAGTTTTAAAGAACTACTGCAAGTCTCGATTAGGAAGGGACAGTGTCTCAGCTGCCACCAAGCATTTACATGTTTTTGAGGGAATGCGAAAGGAGTTTGGCCATGCAAGGTCTTTGGCATTAGCTCAAGCTCAGTATCTGCGTGCACATGATGAAATAAAGATGGCAGTTTCCCGTTTGCACCTAAGGGCAACTGAAGATGATAAATCTCTTGATGCTTTAGGTGAAAATGAATTAGCTGCAGCTAGCTCAGACTTTTCCCATGATAAGTTTATGTCATTGACCATGTTGTCACAGATAAAAGGAAAACTCCGCTACTTAAAGGGTTTGGTTCAATCTAAGCAAAAACTGCAATTCGAAAGTCCAAATAGTTCTTCATTCGCACGAGAGACTACTGCAATGTCAAACTCTACAGAAGAGAAGGGTGCACTTTTATCTAAAACTGATGACGATACATGCCCAATTTGCCAAGAAAAGCTAGGCAAACAGAAAATGGTTTTTCAATGTGGGCATGTTACATGCTGTAAATGCTTATTTGCTATGACTGAGAAAAGACTTCAAAATAGCAAGCTTCGTAATTGGGTGATGTGCCCTACATGTCGACAGCATACTGATTTTGGAAACATTGCCTATGCTGTTGATGCACAGAATGAAACTTCCGGTCCTTCTGTGCTGCATACAATTGACAGCAGTGAAAAATGTGAAGCCTCCATTAGTGTTAAAGGCTCATATGGAACCAAGATTGAAGCAGTCACAAGAAGAATCTTATGGGTAAAGGCTAATGATCATAGAGCAAAAGTTCTTGTATTTTCAAGTTGGAATGATGTACTTGATGTATTGGAGCATGCCTTTGCTGCCAATAACATTACCTACATCCGGATGAAGGGAGGCAGAAAAGCACATGTTGCCATCAGTCAATTTAGAGGAAAACAAAATGGCACAAAAGGAAGTGAGGGGTCAACACCAAAATGTATTCAGGTGTTGTTGCTTTTAATCCAACATGGAGCCAATGGACTCAATCTTTTAGAAGCACAGCATGTAGTCCTTGTAGAGCCGTTACTCAATCCAGCTGCCGAAGCACAAGCAATCAGTCGTGTACATCGGATTGGACAAAAAAATAAGACCCTCATTCATCGTTTCATTGTAAAAGACACGGTTGAAGAGAGTATATATAAATTGAACAGAAGCAGGAGCAATCATTCATTCATCAGTGGGAACACTAAAAATCAAGATCAACCTGTTTTGACCCTGAAGGATGTGGAAGCCTTGCTGTCTAGAGCACCACTAACGATGCCAGAAAGTGATGAAAATCCTAACACAAACACGAATCTTAGACACTTGCCACCATCAGTGGCCGCTGCTATAGCTGCTGAGAGGAGACTTAATGAACAAAGGACATAA 5010 0.4054 MGRRKSKPHRAGGIILETNAAAETELDKQNVVEGGKEAKGDSGGIDKPYFVEVDRSGWLSSKHLDISEVVLRDLNLREGFSGFELSEDFYRDQQYLLRFRVCNVTNVLGRIKLGHWPVLPYTDIHLEFVRRVTIEHVETYTVLLSGVFDGPDEGVTGLLHLASLKFVSLRPVLGVRLSEELSSLRVRVEILKSAFDACESLLDSSRQLWKKSMVNVMSWLRPEIMTLEVRYGFGSCMKMEVDPQTEMADDICKARKHARFDPAGFYEAIKPSKSEPMLEDDIPELLPKLRPYQRRAAFWMVEREKAVEESQGERERNQFHSPLCISMDFLDISFQMFFNPFSGNISLCPETSSPYVFGGILADEMGLGKTVELLACIFAHRRSASESDILIDLEPQVNGDQKVNLKRLKRERVECICGAVSESLKYEGLWVQCDICDAWQHADCVGYSPKGKSLKSKQGCERKTYKTTIAERDGEYVCQMCSELIQATESPIASGATLIVCPAPILPQWHDEIIRHTHQGSLKTCVYEGVRDTSFSNTSLMDISDLASADIVLTTYDVLKEDLSHDSDRHEGDRHFLRFQKRYPVIPTPLTRIYWWRVCLDEAQMVESNTTAATEMALRLHSKYRWCITGTPIQRKLDDLYGLLRFLKASPFDKYRWWTDVIRDPYEKEDMGAMEFTHKIFKQIMWRSSKEHVADELDLPSQEECLSWLTLSPVEEHFYQRQHETCVRDAHEVIESLRNDILSRKGPGSVSLNGSSDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLISKTKIEGEEALRKLVIALNALAAIAAIQKDFSQATLLYSEALTLAEEHSEDFRLDPLLNIHIHHNLSEILPLASNFAIISPSKGKQFSGTSEFKTTKRHLIVKVDHCHVKRQKISGCDDVNVTVPLAEPSDVAFSLSENDLNEDQEFDHLSAIKSLVAECEDSKQKYLSVFSSKLSAAQQEFQNSYTQVCNAYRDSRTDQNTFWWLEALHHAEQNKDFSTELIRKIEEAISGTSNNSKSSRIAARFRSISSLKYQIQTGLDQLEASRKTLLDRLLEIDQTMEKPKEEDIERVGKCRNCQPNCDGPPCVLCELDELFQDYEARLFVLKNERGGIISSAEEAVDFQKKNFALNHFLSKLSQSNHSSTVSDIGNEESKKRNVGQRVVVSRSASELELVLGVLKNYCKSRLGRDSVSAATKHLHVFEGMRKEFGHARSLALAQAQYLRAHDEIKMAVSRLHLRATEDDKSLDALGENELAAASSDFSHDKFMSLTMLSQIKGKLRYLKGLVQSKQKLQFESPNSSSFARETTAMSNSTEEKGALLSKTDDDTCPICQEKLGKQKMVFQCGHVTCCKCLFAMTEKRLQNSKLRNWVMCPTCRQHTDFGNIAYAVDAQNETSGPSVLHTIDSSEKCEASISVKGSYGTKIEAVTRRILWVKANDHRAKVLVFSSWNDVLDVLEHAFAANNITYIRMKGGRKAHVAISQFRGKQNGTKGSEGSTPKCIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKDTVEESIYKLNRSRSNHSFISGNTKNQDQPVLTLKDVEALLSRAPLTMPESDENPNTNTNLRHLPPSVAAAIAAERRLNEQRT 1669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01487 1669 CDD SF2_C_SNF 1447 1584 - -
Pumo9g01487 1669 CDD PHD_TCF19_like 416 481 - -
Pumo9g01487 1669 ProSitePatterns Zinc finger PHD-type signature. 415 481 IPR019786 -
Pumo9g01487 1669 SMART ring_2 1356 1403 IPR001841 -
Pumo9g01487 1669 SUPERFAMILY RING/U-box 1351 1408 - -
Pumo9g01487 1669 Coils Coil 1067 1087 - -
Pumo9g01487 1669 ProSiteProfiles Zinc finger PHD-type profile. 412 484 IPR019787 -
Pumo9g01487 1669 SMART PHD_3 414 482 IPR001965 -
Pumo9g01487 1669 SMART ultradead3 285 658 IPR014001 -
Pumo9g01487 1669 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1453 1624 IPR001650 -
Pumo9g01487 1669 ProSiteProfiles Zinc finger RING-type profile. 1356 1404 IPR001841 -
Pumo9g01487 1669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 1625 IPR027417 -
Pumo9g01487 1669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 400 481 IPR013083 -
Pumo9g01487 1669 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 6 1668 - -
Pumo9g01487 1669 SMART helicmild6 1481 1573 IPR001650 -
Pumo9g01487 1669 SUPERFAMILY FYVE/PHD zinc finger 411 483 IPR011011 -
Pumo9g01487 1669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 687 IPR027417 -
Pumo9g01487 1669 Gene3D - 346 397 IPR038718 -
Pumo9g01487 1669 CDD DEXQc_SHPRH 289 688 - -
Pumo9g01487 1669 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 465 650 IPR014001 -
Pumo9g01487 1669 Pfam Helicase conserved C-terminal domain 1451 1573 IPR001650 -
Pumo9g01487 1669 Pfam SNF2-related domain 292 784 IPR000330 GO:0005524|GO:0140658
Pumo9g01487 1669 Gene3D - 1416 1653 IPR027417 -
Pumo9g01487 1669 Pfam Zinc finger, C3HC4 type (RING finger) 1356 1403 IPR018957 GO:0046872
Pumo9g01487 1669 Gene3D - 482 709 IPR038718 -
Pumo9g01487 1669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1336 1415 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01487 Pumo-Chr9 42522265 42534909 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01487 489 782 RAD5 or RAD16-like Gene Family AT5G22750 31.438 3.23e-34 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo9g01487 SNF2_N 8.6e-88 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01487 K15710 - gmx:100776659 3126.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01487 9 42522265 42534909 Pumo9g01487 9 42522265 42534909 ECH