Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01482 ATGAAAAACATGCTTTGTGCTCCTGAGAGTGAAAGTGTCCCACCAAAGAAGAGAGTGATAATCAAAGAACTCGTTAAGGGTCAGGAAGCTGCAACTCAACTCAAGGTTCTTCTTGAGAACCCCTTTGGGAGTGAAGGCTCTAATTTCTTTTCTAAGGAACTCGTGGCCATTGTGCAGAGATCTTTCACACAAGCTCTTTCTATTATAAACTCTTCTTCTGCAGATGAGGTGGCTCATCGGAATCTTCTATATTCCGGCGAAAATGGGTCGCCGGTGGCCGGAGATTGCAGTCAGAGTAGGAAGATATCCCAAAAGGGTGGAAGAGGTCGCTACAATAGAAGAAGGAGTACAGTAACATGGACCAGACTATCCTGCATTACTGAGGACAATCATGCATGGAGGAAGTATGGACAGAAGGGAATCCTGAATTCTGAATTTCCTAGGAGTTACTTCAGGTGCAGTCATAAGAATGATCAAGGTTGCCGAGCAATCAAACAAGTGCAGAGGGATCAAGAGAATCCGGATATGTACCGAACTACCTATATTGGCATTCACACATGCAATGCCGCCCCCAATGCTACACATTTGGCCACAGATCTTCTGAATTCTGATGGTGACGCCAAGGTACCAAATGTTCAGGATCACCACCACATTAGCTCACCAAGCTTAACTATAAAACAAGATTTTCTCAAAGAAGACACACCGAGTGATGTAACAGATCACAAGTTATTATTGGATAATGCAGATAATGTGTATTCATGCACAGACTCCCAAAGTCTGGACATGGATTTTGGAGTGCCATCTGTTGATCATTTTGGCACAGACTTTCACTTTTAG 837 0.4349 MKNMLCAPESESVPPKKRVIIKELVKGQEAATQLKVLLENPFGSEGSNFFSKELVAIVQRSFTQALSIINSSSADEVAHRNLLYSGENGSPVAGDCSQSRKISQKGGRGRYNRRRSTVTWTRLSCITEDNHAWRKYGQKGILNSEFPRSYFRCSHKNDQGCRAIKQVQRDQENPDMYRTTYIGIHTCNAAPNATHLATDLLNSDGDAKVPNVQDHHHISSPSLTIKQDFLKEDTPSDVTDHKLLLDNADNVYSCTDSQSLDMDFGVPSVDHFGTDFHF 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01482 278 SMART WRKY_cls 127 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo9g01482 278 Pfam WRKY DNA -binding domain 128 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo9g01482 278 ProSiteProfiles WRKY domain profile. 126 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo9g01482 278 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 24 216 IPR044810 GO:0003700
Pumo9g01482 278 SUPERFAMILY WRKY DNA-binding domain 125 189 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo9g01482 278 Gene3D WRKY domain 110 182 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01482 Pumo-Chr9 42495447 42499848 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01482 16 189 WRKY Transcription Factor Family AT3G56400 42.857 7.76e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo9g01482 WRKY 2.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01482 - - gmx:100796599 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01482 9 42495447 42499848 Pumo9g01482 9 42495447 42499848 ECH
Pumo9g01482 9 42495447 42499848 Pumo10g01543 10 20392499 20395262 PCT