Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01480 ATGAAAAACATGGTTTGTCCTGAAAGTGAAAGTGTCTCAGCCAAGAAGAAGAGAGTGATAATCAAAGAACTTGTTAAGGGTCAGGAAGCTGCTACCCAACTCAAGGTTCTTCTTGAGAACCCCTCTGGGAGTGAAGGCTCTAATTTTTCTTCTGAGGAACTCATGGGCAATGTGCTGAGATCTTTCACACAAGCTCTTTCTATTATAAACTGTGGTTCTGCAGATGAGGTGGCTCGTCGGAATCTCCTGAATTCCGGCGAAAATGGGTCGCCGGTGGCCGGTTCCGGCAATGATCCAACTTCTGGAGATTGCAATGAGAAGAGATCCCAAAAGGGTGGGAGAGGTCGCTACAATAGAAGGAAGAGTGCAGTGTCATGGACCATACTCTCATGCACCACTCATGATAATCATGCATGGAGGAAGTATGGACAAAAGGGAATCCTGAATTCTGAATTTCCTAGGAGTTACTTCAGGTGCAGTCACAAGTATGATCAAGGTTGCCAAGCAACCAAACAGGTGCAGCTGGATCAGGAGAATCCGAATATGTACCAAACTACGTACATTGGACTTCACACATGCAATGCCACCCCTATGGCTGCACATTCAGCCATAGGTTCTAGTTCTACTGCATGGGAATCATATCTTCTGAATTTTGATGGTGACTCCAAGGTACCAAATGTACAAGATCACCACATTAGCTCACCAAGCCTAACTGTAAAACAAGAATTTCCCAAAGAAGACACACCAAGTGATGTTACAGGTCACAAGTTGGACACTAACTTGTGGTCAGATTTGAAGGACTTTCAACCATTCAAGCCTACCATTATGCCCTTAAAGATGGAATCTGATAATAATAATGCAGATAATGTGTATTCATGTACAGACTCTCAACATCTGGACATGGATTTTGAGGGTCCATCTGTTCATTTTGGCACTGACTTCCACTTTGACGAAAGTCACTTGCTTTAA 969 0.4355 MKNMVCPESESVSAKKKRVIIKELVKGQEAATQLKVLLENPSGSEGSNFSSEELMGNVLRSFTQALSIINCGSADEVARRNLLNSGENGSPVAGSGNDPTSGDCNEKRSQKGGRGRYNRRKSAVSWTILSCTTHDNHAWRKYGQKGILNSEFPRSYFRCSHKYDQGCQATKQVQLDQENPNMYQTTYIGLHTCNATPMAAHSAIGSSSTAWESYLLNFDGDSKVPNVQDHHISSPSLTVKQEFPKEDTPSDVTGHKLDTNLWSDLKDFQPFKPTIMPLKMESDNNNADNVYSCTDSQHLDMDFEGPSVHFGTDFHFDESHLL 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01480 322 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 23 209 IPR044810 GO:0003700
Pumo9g01480 322 SMART WRKY_cls 133 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo9g01480 322 MobiDBLite consensus disorder prediction 83 103 - -
Pumo9g01480 322 MobiDBLite consensus disorder prediction 83 118 - -
Pumo9g01480 322 Pfam WRKY DNA -binding domain 135 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo9g01480 322 ProSiteProfiles WRKY domain profile. 135 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo9g01480 322 Gene3D WRKY domain 117 188 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo9g01480 322 SUPERFAMILY WRKY DNA-binding domain 130 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01480 Pumo-Chr9 42471585 42475689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01480 16 195 WRKY Transcription Factor Family AT3G56400 42.391 1.13e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo9g01480 WRKY 1.5e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01480 - - gmx:100796071 479.174