Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01472 ATGTCCAAGCCACTGCTAGGCATAGGGGAAGAGGAAGGTCAAAGCAATGTCACTTTGTTGGTTTCTTCCTCAGCCACCATGGAAAGTGTGTGCCTGAATAGCTCAAAATTGAAAGAGCGCAACTACATGGGGCTATCTGATTGTTCATCTGTGGACAGCTCTGCGCCGTCCTTCTCAGATGAGACTAAAAGTAATCTGAACCTTAAGGCTACTGAGCTCAGACTGGGGCTTCCGGGATCACAGTCTCCCGAACGAGATTCAGATATTTGCTTGAGAAGTTCAATTCAGTTTGATGAAAAGCCACTGTTTCCTTTGCATCCTGCTACTGATGATCACCATTCCTCATCAAAGCCTGCTGTTTTGGGTAACAAAAGAGGGTTCTCAGATGTCATGAATGAATTCGCTGAGGAGAAATTGCTTGTTAAATCTGAGGTCAACACAATATTGTCACCCAGGCCTTCTCCTAATGTGGGGTTGAAACCAAGCTCTATGCTTGCGAATGTTGAGGCTCAGCAAGCCAAAGCCAAAGAACTCGCAACAGCGAAGGTCAATGAAAGCAGACCAAATCTTAATGGTTCTGCTAATAACAATAGCAGTGCACCAGCTACCAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGGTCATTTAGGAAAAATTCATTGGCCACTACTTCAAAGAATGTTGAAGAAGTAGATGGAAAAGCAGGGACTGGTGCACTGTTTGTAAAGGTCAGTATGGATGGTGCTCCTTATTTAAGAAAAGTAGACTTGAAGAATTACCCTGCGTATACCGAACTATCTTCTGCTCTGGAGAATATGTTCAGCTGTTTTACCATAGGTTCTTGTGGATCTCATGGAAATCTGGGAGGGGAGGTGCTGAATGAAACCAAGCTGAAGGATCTGCTTCATGGGTCTGAATATGTTCTTACGTACGAGGATAAAGATGGCGACTGGATGCTAGTGGGTGATGTTCCCTGGGAGATGTTTATTGAGACGTGCAAGAGGCTAAGGATCATGAAGAGCTCCGATGCCATTGGTCTAGCACCAAGAGCTGTTGAAAAAAGTAAGAGCAGGAACTAG 1080 0.4481 MSKPLLGIGEEEGQSNVTLLVSSSATMESVCLNSSKLKERNYMGLSDCSSVDSSAPSFSDETKSNLNLKATELRLGLPGSQSPERDSDICLRSSIQFDEKPLFPLHPATDDHHSSSKPAVLGNKRGFSDVMNEFAEEKLLVKSEVNTILSPRPSPNVGLKPSSMLANVEAQQAKAKELATAKVNESRPNLNGSANNNSSAPATKAQVVGWPPIRSFRKNSLATTSKNVEEVDGKAGTGALFVKVSMDGAPYLRKVDLKNYPAYTELSSALENMFSCFTIGSCGSHGNLGGEVLNETKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCKRLRIMKSSDAIGLAPRAVEKSKSRN 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01472 359 FunFam Auxin-responsive protein 234 351 - -
Pumo9g01472 359 Gene3D - 234 353 - -
Pumo9g01472 359 MobiDBLite consensus disorder prediction 186 205 - -
Pumo9g01472 359 Pfam AUX/IAA family 71 350 IPR033389 -
Pumo9g01472 359 SUPERFAMILY CAD & PB1 domains 237 340 - -
Pumo9g01472 359 ProSiteProfiles PB1 domain profile. 239 341 IPR000270 GO:0005515
Pumo9g01472 359 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 346 IPR003311 GO:0005634|GO:0006355
Pumo9g01472 359 MobiDBLite consensus disorder prediction 186 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01472 Pumo-Chr9 42299995 42304280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01472 243 349 B3 DNA Binding Superfamily AT4G23980 29.907 1.12e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pumo9g01472 AUX_IAA 2.3e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01472 K14484 - gmx:100815447 641.343