Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01469 ATGGAGCTCCATGACCATGATTTATTGGAGGAATTAATGCCTCTAAGAAGAGAACCATGGGATACCAATCCATGTTCACTAGAAAACCAGCTTTTCTCTAATGGCTTGGGTCTTGATTGTTTTGATCAAAACTATAATCAAGCTTTTCCTCCAAATTCTTTCTCTTGCCAAGAAGTTCCTCAAAGTTACAACAACAACTACACCTACAATGAAATCTATAGTTCCTTACTTGATGAATTCTCAGCACCCCAAGTTATAGATTCATCATCCTATAACACCCTTGATACTCCACATAATACCCCTCCATTTCTGGCTCAAGAAGACTATTATCCATTGTCCATGATGGAAGAAGAAGATCCGGGTTTGCTTGGGGAAGAGCTTCAATATTGTTTGGACCTGCAAACCACATGCAAAATGGAGCCAAGCCATTCCCCTGAAATGCCTATTTTCAACACAGATTCATGTGTGGAGAGAAAGAATAGAGCAAAGAAGCTTCAGGGGCAGCCTTCAAAGAACCTAATGGCAGAGAGGAGAAGAAGAAAGAGATTGAATGACAGGCTCTCCATGCTAAGATCAATTGTCCCTAAGATAAGTAAGATGGACAGAACAGCTATACTTGGAGACACTATCGATTATATGAAAGAGCTCTTGGAAAAGATTAATAATTTGAAACAAGAAATAGAAGTGGATTCCAACATGGCTGGCATTTTCAAGGATGTAAAGCCTAACGAAATCATAGTGAGAAATTCTCCAAAGTTTGATGTGGAGAGGAGAAATGTCAATACAAGGTTGGAGATCTGCTGTGCAGGGAAGCCAGGATTGTTGCTGTCTACAGTAAACGCCTTGGAAACGTTAGGCCTCGAGATCCAACAATGCGTTATTAGCTGTTTCAATGATTTCACAGTGCAAGCTTCTTGCTCAGAGGAATTGCAGCAGAAGACAATTCTGAGTTCCGAAGATATAAAGCAAGCACTATTTAGAAGCGCAGGATATGGAGGACGATGTTTGTGA 1011 0.4045 MELHDHDLLEELMPLRREPWDTNPCSLENQLFSNGLGLDCFDQNYNQAFPPNSFSCQEVPQSYNNNYTYNEIYSSLLDEFSAPQVIDSSSYNTLDTPHNTPPFLAQEDYYPLSMMEEEDPGLLGEELQYCLDLQTTCKMEPSHSPEMPIFNTDSCVERKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTAILGDTIDYMKELLEKINNLKQEIEVDSNMAGIFKDVKPNEIIVRNSPKFDVERRNVNTRLEICCAGKPGLLLSTVNALETLGLEIQQCVISCFNDFTVQASCSEELQQKTILSSEDIKQALFRSAGYGGRCL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01469 336 SMART finulus 173 222 IPR011598 GO:0046983
Pumo9g01469 336 Pfam Helix-loop-helix DNA-binding domain 173 216 IPR011598 GO:0046983
Pumo9g01469 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 216 IPR011598 GO:0046983
Pumo9g01469 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 229 IPR036638 GO:0046983
Pumo9g01469 336 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 75 330 - -
Pumo9g01469 336 Gene3D - 156 231 IPR036638 GO:0046983
Pumo9g01469 336 Coils Coil 206 233 - -
Pumo9g01469 336 CDD ACT_UUR-ACR-like 262 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01469 Pumo-Chr9 42253211 42255382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01469 158 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 65.385 1.23e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo9g01469 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01469 - - gmx:100814388 598.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01469 9 42253211 42255382 Pumo9g01469 9 42253211 42255382 ECH