Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01461 ATGTGGATCGACGCGTCTTCTACTTCGCTTTTGCAACAACCGCGTCTCCTCTTTCGATTTCGCTTTCCGTTTTTCCCCTTCTTCGTCAAATTGAGGTTTCGTTTCTCGATCTGTTTTGCAGCGAGTGATTTTCTGAATCGAAGGATCTTATTGTTAGGGTTTGGTATGGGGAGAGGAAAGATCGTGATAAGGAGGATCGACAATTCCACGAGCCGGCAAGTGACGTTCTCGAAGCGAAGGAACGGTTTGCTGAAGAAGGCGAAGGAGCTCGCGATCTTGTGCGATGCTGAAGTCGGAGTTATGATCTTCTCCAGCACCGGAAAACTCTACGATTTCGCCAGCTCCAGCATGAAATCAGTAATTGATCGATACAACAAATCAAAAGAAGAACATTGTCAACTCGGGAGTTCAGCCTCTGAAATTAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAATTACACAATTTGCAAGAAAGTCACCGGAAAATGATGGGGGAAGAACTGTCAGGCTTGACAGTCAAAGAATTACAAAATTTGGAGAACCAATTAGAAATCAGCCTTCGTGGTGTCCAAATGAAAAAGGATCAACTTTTAATGGATGAAATACAAGAGCTAAATCGAAAGGGAAACCTCATACACCAAGAAAATGTGGAACTGTATAAGAAGGTAAACCTAATTTGTCAAGAAAACATGGAACTGAAAAAGAAGGTCTATGGAACAAAAGATGATAACGAAACAAACAGAGATTCTGTTCTCACAAATGGTCTAAGCATAGGAGAGGATTTGCAAGTGCCTGTGAATCTCCAGCTAAGCCAGCCACAGCAACAACACTACAAGGCACCTTCAGGAACTACAGAATTGGGGTATGAGCTTTTGATCATTTAA 891 0.4242 MWIDASSTSLLQQPRLLFRFRFPFFPFFVKLRFRFSICFAASDFLNRRILLLGFGMGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFASSSMKSVIDRYNKSKEEHCQLGSSASEIKFWQREAAMLRQQLHNLQESHRKMMGEELSGLTVKELQNLENQLEISLRGVQMKKDQLLMDEIQELNRKGNLIHQENVELYKKVNLICQENMELKKKVYGTKDDNETNRDSVLTNGLSIGEDLQVPVNLQLSQPQQQHYKAPSGTTELGYELLII 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01461 296 ProSitePatterns MADS-box domain signature. 58 112 IPR002100 GO:0003677|GO:0046983
Pumo9g01461 296 SMART madsneu2 56 115 IPR002100 GO:0003677|GO:0046983
Pumo9g01461 296 ProSiteProfiles MADS-box domain profile. 56 116 IPR002100 GO:0003677|GO:0046983
Pumo9g01461 296 Gene3D - 68 138 IPR036879 GO:0003677|GO:0046983
Pumo9g01461 296 PRINTS MADS domain signature 78 93 IPR002100 GO:0003677|GO:0046983
Pumo9g01461 296 PRINTS MADS domain signature 58 78 IPR002100 GO:0003677|GO:0046983
Pumo9g01461 296 PRINTS MADS domain signature 93 114 IPR002100 GO:0003677|GO:0046983
Pumo9g01461 296 ProSiteProfiles K-box domain profile. 141 231 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo9g01461 296 SUPERFAMILY SRF-like 57 140 IPR036879 GO:0003677|GO:0046983
Pumo9g01461 296 FunFam MADS-box transcription factor MADS-MC 68 140 - -
Pumo9g01461 296 CDD MADS_MEF2_like 57 131 IPR033896 GO:0000977|GO:0045944
Pumo9g01461 296 PANTHER SERUM RESPONSE FACTOR HOMOLOG 58 262 - -
Pumo9g01461 296 Pfam K-box region 139 225 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pumo9g01461 296 Coils Coil 141 168 - -
Pumo9g01461 296 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 65 112 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01461 Pumo-Chr9 42100126 42116060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01461 56 286 MADS-box Gene Family AT2G22630 60.759 8.23e-96 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pumo9g01461 K-box 3.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01461 K09264 - gmx:100812413 444.891