Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01459 ATGGCCTCACAAGCAGTGCAATTGCGTATCGAAGACAGTCAAGTGGTTATGGACAATGGCATACTACAAGTGTATTTATCAAATCCAGGTGGATTTGTTACTGGAATACAATATAATGGAATTGATAATCTGCTTGAAGTTCTTAGCGAAAGTGATGATAGAGGGTATTGGGACGTTGTTTGGAGTGAAGCCGGAAGTACAGGAACAACTGGGACATTTGAACGGATTGTGGGAACAAGTTTTAATGTTATAATGGAAAATGAGGAACAGGTTGAAATCTCATTCACAAGTCAGTGGGATCCATCTCTGAAGGGAAAGAGAGCACCTCTTAATATCGACAAAAGGTATGTGATGCTTCGTAACTCCTCAGGCTTCTACTCCTATGCCATCTTTGAACACCTAGCGGAATGGCCTGCTTTCAACATACCTCAAATAAGGATTGTTTACAAGCTTCGAAAAGATAAATTTCATTACATGGCCGTGTCAGATAACAGACAAAGATTTATGCCTCTCCCAGACGATAGATTGCCCGAAAGAGGAAAAGAACTAGTTCCCCCAGAGGCAGTTTTGCTCGTCAATCCGGTGGAGCCAGAGTTTAAGGGAAAGGTGGATGACAAGTATCAATACTCAAGTGACAATAAAGATCTTAAGGTTCATGGGTGGATAAGTTCCCAATCCGAAACTGATGCAGCCATGGGGTTTTGGGTAATCATACCCAGCAATGAGTTCCGATCAGGTGGCCCTGCTAAACAGAACCTTACTTCCCACGTTGGCCCATATTGCCTCTCAATGTTTCTTAGTGCTCATTATGCAGGAGAGGATATAGTTTTGAAACTCCAGCCTAATGAACCGTGGAAGAAAGTTTTTGGGCCAACTTTTGTTTATCTTAACACCTTGTTAGATGGTGATGACTCGCTGGAGCTCTGGGAGGACGCTAAATATCAGGTTTCAATTTCATTATCAAGTTGTTGA 972 0.4218 MASQAVQLRIEDSQVVMDNGILQVYLSNPGGFVTGIQYNGIDNLLEVLSESDDRGYWDVVWSEAGSTGTTGTFERIVGTSFNVIMENEEQVEISFTSQWDPSLKGKRAPLNIDKRYVMLRNSSGFYSYAIFEHLAEWPAFNIPQIRIVYKLRKDKFHYMAVSDNRQRFMPLPDDRLPERGKELVPPEAVLLVNPVEPEFKGKVDDKYQYSSDNKDLKVHGWISSQSETDAAMGFWVIIPSNEFRSGGPAKQNLTSHVGPYCLSMFLSAHYAGEDIVLKLQPNEPWKKVFGPTFVYLNTLLDGDDSLELWEDAKYQVSISLSSC 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01459 323 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 319 - -
Pumo9g01459 323 SUPERFAMILY Galactose mutarotase-like 13 297 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pumo9g01459 323 CDD RGL4_N 8 298 - -
Pumo9g01459 323 Pfam Rhamnogalacturonate lyase family 3 203 IPR010325 -
Pumo9g01459 323 Gene3D - 5 280 IPR014718 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01459 Pumo-Chr9 42020794 42025021 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01459 1 322 Polysaccharide Lyase AT1G09890 61.610 1.74e-141 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01459 K18195 - gmx:100815677 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01459 9 42020794 42025021 Pumo9g01459 9 42020794 42025021 ECH