Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01458 ATGAACGAGGAGGTTCAAAGTTGGCCCTATGATTTTCCAGCTTCAGAAGATTTTCAAAAGTCTAGCCAACGGGGCAGTTTGTGTGGCACATTACTAGTTCGAGACAGGTGTATAAGTGACGAGGACATTATAGCAGAAGGTGCATACGTAGGACTGGCACCACCAGGAGAAGCTGGATCCTGGCAAAGAGAATGCAAGGGTTACCAATTTTGGACTAGAGCAAACGAGGAAGGTTACTTCTCAATCAATAATATACGCAGTGGGGATTACAATCTCTACGCATGGGTTCCAGGTTTCATTGGAGAGTATTGGAACAATGCTGTCCTCACCATAACACCAGGTTGTGAAATAAACGTTGGTGAGATTATTTATGAGCCACCAAGAGATGGCCCAACGTTGTGGGAGATAGGCACTCCTGATCGCTCTGCTGCTGGATTCTATGTTCCTGATCCTAATCCCAACTACATAAACAAGCTTTTTGTCAACCATCCAGACAAGTTTAGGCAGTATGGCTTGTGGGAAAGATATGCAGAGTTATACCCAATTGAAGATTTAATTTATACAGTGGGTGTCAGTGACTACACAAAAGATTGGTTCTATGCACAGGTCACCAGGAAGCAAGAAGATGGCAGTTACCAAGGAACTACATGGCAAATTAAGTTCAACCTCGATGATGTGGATGCAAGTAAAATCTACAAATTGCGGTTGGCACTTGCAAGTGCTAATGTCTCTGAATTACAGGTTAGAGTGAATGATCCAAAACAAGATCCTCCTCTGTTCACTACGGGAGTGATTGGGAAAGACAATGCAATAGCAAGACATGGAACTCACGGACTCTACTGGCTATTCAACATTGATGTGCCTGGTCTTCTGCTAGAAAAAGGAGTTAATACTATATTTCTAAGACAGACTATGGCTAGTGGCCCCTTGGCCCTCTTCCAGGGGATAATGTATGACTATATTCGTCTAGAAGATCCTAATTTTCCTCCCATAAAAAAATATTAA 1005 0.4269 MNEEVQSWPYDFPASEDFQKSSQRGSLCGTLLVRDRCISDEDIIAEGAYVGLAPPGEAGSWQRECKGYQFWTRANEEGYFSINNIRSGDYNLYAWVPGFIGEYWNNAVLTITPGCEINVGEIIYEPPRDGPTLWEIGTPDRSAAGFYVPDPNPNYINKLFVNHPDKFRQYGLWERYAELYPIEDLIYTVGVSDYTKDWFYAQVTRKQEDGSYQGTTWQIKFNLDDVDASKIYKLRLALASANVSELQVRVNDPKQDPPLFTTGVIGKDNAIARHGTHGLYWLFNIDVPGLLLEKGVNTIFLRQTMASGPLALFQGIMYDYIRLEDPNFPPIKKY 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01458 334 Pfam Polysaccharide lyase family 4, domain II 46 118 IPR029413 -
Pumo9g01458 334 SUPERFAMILY Galactose-binding domain-like 129 324 IPR008979 -
Pumo9g01458 334 Gene3D - 20 119 - -
Pumo9g01458 334 CDD RGL4_M 23 122 IPR029413 -
Pumo9g01458 334 Pfam Polysaccharide lyase family 4, domain III 132 323 IPR029411 -
Pumo9g01458 334 SUPERFAMILY Starch-binding domain-like 22 120 IPR013784 GO:0030246
Pumo9g01458 334 Gene3D - 130 324 - -
Pumo9g01458 334 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 327 - -
Pumo9g01458 334 FunFam Rhamnogalacturonate lyase B 20 119 - -
Pumo9g01458 334 CDD RGL4_C 134 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01458 Pumo-Chr9 42018666 42020660 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01458 4 327 Polysaccharide Lyase AT1G09880 64.110 6.66e-158 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01458 K18195 - gmx:100815677 641.728