Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01456 ATGGCGGTGTCAGATAACAGACAAAGATTTATGCCTCTCCCAGATGATAGATTGCCAGATAGAGGAAAAGAATTAGTTCCACCTGAGGCAGTTTCGCTCGTCAATCCGGTGGAACCAGAGTTTAAGGGAGAGGTGGATGACAAGTATCAATACTCAAGTGAGAACAAAGATCTTGCGGTTCATGGGTGGATAAGTTCCCATTCTGAAGCTGATCCAACCATGGGGTTTTGGGTGATCATACCCAGCAATGAGTTCCGATCAGGTGGCCCAGTTAAACAGAACCTTACTTCCCACGTCGGCCCAATAAGCCTCGCGATGTTTCTTAGTGCTCACTACGCAGGAGAGGATATAGTTTTGAAACTCCAGCCTAACGAGCCGTGGAAGAAGGTTTTTGGGCCAACTTTTGTTTATCTTAACACTTTGCTAGATGGTGATGACCCGCTAGAGCTCTGGGAAGACGCTAAGTGTCAGATGAACGAGGAGGTTCAAAGTTGGCCGTATGATTTTCCAGCTTCAGAAGATTTTCAAAAGTCTAGCCAACGGGGCAGTGTGTGTGGCACATTACTAGTTCGAGACAGGTACGTAACACCAAATGACGAGAACATAATAGCAGAAGGCGCATACGTAGGACTAGCACCACCAGGAGAAACTGGATCCTGGCAAAGAGAATGCAAGGGATACCAATTTTGGACTAAAACAAACGAGGAAGGCTACTTCTCAATCAATAATATACGTAGTGGGGATTACAATCTCTACGCATGGGTTCCAGGTTTCATTGGAGAATATTGGAACAATGCTCTTCTCACCATAACACCAGGTTGTGAAATAAACGTTGGTGAGATTACTTATGAGCCACCAAGAGATGGCCCAACATTATGGGAGATAGGCACTCCTGATCGCTCTGCTGCTGAATTCTATGTTCCTGATCCCAATCCCAACTACATTAACAAGCTTTTTGTCGACCATCCAGACAAGTTTAGGCAGTTTGGCTTGTGGGAAAGATATGCAGATTTATACCCAAATGAAGATTTAATTTATACAGTGGGTGTCAGTGACTACACAAAAGAGTGGTTCTTTGCACAGGTCACCAGGAAGCAAGAAGATGGTAGTTACCAAGGAACTACATGGCAAATTAAGTTCAACCTCGATGATGTGGATGCAAGTAAAATATACAAATTGCGGTTGGCACTTGCAAGTGCAAATGTCTCTGAATTACAGGTTAGAGTGAATGATCCAAAACAAGATCCTCCTCTGTTCACTACGGGAGTGATTGGGAAGGACAATGCAATAGCAAGACATGGAATTCATGGACTCTACTGGCTATTTAACATTGATGTGTCTGGTCTTCTGCTAGAGAATGGTGTTAACACTATATTTCTAACACAGACTATGGCCAGTGGCCCCTTGGCCCTCTTCCAGGGGATAATGTACGACTATATTCGTCTAGAAGGCCCCAACCCTTTATCTCCCAAAAAAAATATATCAAATTAG 1491 0.4386 MAVSDNRQRFMPLPDDRLPDRGKELVPPEAVSLVNPVEPEFKGEVDDKYQYSSENKDLAVHGWISSHSEADPTMGFWVIIPSNEFRSGGPVKQNLTSHVGPISLAMFLSAHYAGEDIVLKLQPNEPWKKVFGPTFVYLNTLLDGDDPLELWEDAKCQMNEEVQSWPYDFPASEDFQKSSQRGSVCGTLLVRDRYVTPNDENIIAEGAYVGLAPPGETGSWQRECKGYQFWTKTNEEGYFSINNIRSGDYNLYAWVPGFIGEYWNNALLTITPGCEINVGEITYEPPRDGPTLWEIGTPDRSAAEFYVPDPNPNYINKLFVDHPDKFRQFGLWERYADLYPNEDLIYTVGVSDYTKEWFFAQVTRKQEDGSYQGTTWQIKFNLDDVDASKIYKLRLALASANVSELQVRVNDPKQDPPLFTTGVIGKDNAIARHGIHGLYWLFNIDVSGLLLENGVNTIFLTQTMASGPLALFQGIMYDYIRLEGPNPLSPKKNISN 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01456 496 Pfam Rhamnogalacturonate lyase family 1 45 IPR010325 -
Pumo9g01456 496 Gene3D - 177 278 - -
Pumo9g01456 496 SUPERFAMILY Galactose-binding domain-like 288 483 IPR008979 -
Pumo9g01456 496 SUPERFAMILY Starch-binding domain-like 178 279 IPR013784 GO:0030246
Pumo9g01456 496 CDD RGL4_N 15 147 - -
Pumo9g01456 496 CDD RGL4_M 180 281 IPR029413 -
Pumo9g01456 496 Gene3D - 29 121 IPR014718 GO:0030246
Pumo9g01456 496 Gene3D - 289 483 - -
Pumo9g01456 496 Pfam Polysaccharide lyase family 4, domain II 205 277 IPR029413 -
Pumo9g01456 496 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 486 - -
Pumo9g01456 496 FunFam Rhamnogalacturonate lyase B 177 278 - -
Pumo9g01456 496 MobiDBLite consensus disorder prediction 1 23 - -
Pumo9g01456 496 Pfam Polysaccharide lyase family 4, domain III 291 482 IPR029411 -
Pumo9g01456 496 CDD RGL4_C 293 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01456 Pumo-Chr9 42002911 42008137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01456 1 486 Polysaccharide Lyase AT1G09890 65.298 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01456 K18195 - gmx:100815677 918.302