Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01447 ATGTTACCTCGGATGCGGTCTATGTCTCCGGAGGCGGAGGCCCCGAAGAGTCCAGCCAGCTTACGCTGTCGTTTCGCGGCCAAGTTTACGTCTTCGATGCCGTTACGCCTGATAAGGTTCAAGCGGTGTTGTTACTGTTGGGTGGATGTGAACTATCTTCGGGTGGTTCGCCATGTGTGGATGCGGCGGCTCAACAGAATCAGAGGGGTTCAATGGAATTTCCAAAATGTAGTCTACCACAGCGAGCTGCCTCAGTTAGATAGGTTCAGGCAGAAGAGGAAAGAGCGATGCTTTGATAAAAAAGTGAGATATAGCGTACGGCAAGAAGTTGCGCTCAGGATGCACCGTAATAAGGGTCAGTTCACTTCATCTAAGAAACAAGATGGAGCTAATAGTTATGGTACAGACCAAGATTCAGGACAGGATGATAGTCAATCAGAAACCTTATGCACACATTGTGGAACTAGTTCAAAATCCACCCCAATGATGCGGCGAGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGTGGGCTTTTTTGGGCAAATAGGGGTGCTTTGAGAGACCTTTCTAAGAGAAATCAGGAACACTCTCTTCCACCAGTTGAGCAGGTTGATGAAGGTAATGACTCAGACTGTCGGACTGCCGCCGCCGACCCTGCACATAACAATCTTGCTGCTTTCTCAGAGCATGATAATCCAGCTTTGGTACCTGATCGTAAAGTTTTCCAGTCTCAGAAAATGCTGGAGTAG 753 0.4834 MLPRMRSMSPEAEAPKSPASLRCRFAAKFTSSMPLRLIRFKRCCYCWVDVNYLRVVRHVWMRRLNRIRGVQWNFQNVVYHSELPQLDRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGANSYGTDQDSGQDDSQSETLCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGALRDLSKRNQEHSLPPVEQVDEGNDSDCRTAAADPAHNNLAAFSEHDNPALVPDRKVFQSQKMLE 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01447 250 Gene3D - 140 198 IPR013088 GO:0006355|GO:0008270
Pumo9g01447 250 ProSiteProfiles CCT domain profile. 82 124 IPR010402 GO:0005515
Pumo9g01447 250 PANTHER GATA TRANSCRIPTION FACTOR 28 85 219 IPR045280 GO:0006355
Pumo9g01447 250 CDD ZnF_GATA 150 195 IPR000679 GO:0006355|GO:0043565
Pumo9g01447 250 SMART GATA_3 144 197 IPR000679 GO:0006355|GO:0043565
Pumo9g01447 250 MobiDBLite consensus disorder prediction 115 167 - -
Pumo9g01447 250 ProSitePatterns GATA-type zinc finger domain. 150 177 IPR000679 GO:0006355|GO:0043565
Pumo9g01447 250 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 146 196 - -
Pumo9g01447 250 MobiDBLite consensus disorder prediction 193 222 - -
Pumo9g01447 250 Pfam CCT motif 85 124 IPR010402 GO:0005515
Pumo9g01447 250 MobiDBLite consensus disorder prediction 123 163 - -
Pumo9g01447 250 Pfam GATA zinc finger 150 185 IPR000679 GO:0006355|GO:0043565
Pumo9g01447 250 ProSiteProfiles GATA-type zinc finger domain profile. 144 195 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01447 Pumo-Chr9 41899241 41904665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01447 71 239 Tify Gene Family AT4G24470 57.143 1.51e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo9g01447 CCT 5.1e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01447 - - gmx:100810269 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01447 9 41899241 41904665 Pumo9g01447 9 41899241 41904665 ECH
Pumo9g01447 9 41899241 41904665 Pumo10g01083 10 13974915 13979190 PCT