Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo9g01431 | ATGGATGGTGCAACTTCTTTGAACCCATTCCAAACGCTCCCCATCTTCACCCTCGTTCTCATCACCCCCTTCATCCTCGGCGACGACAACAGCGGCGCAACCCTTCCCTTTCCCACCCTCGAAGACGCCGCCGCCGCCGCCACGTCATCACCGCCGGGTCTCTCGACTAATAACTATTCCCCTTCGGATCCGTTCAAGCCGAGAACGGGCGTTCTAGTTGGCGTGTTAACCACCACGTTCTCCCTTACCTTCCTTTTCCTCCTCTACATCAAGCACTGCAACGACGCCAACAACTTCGCCAACGCTAACACGAACTCCCAGCAACCCTCGCACGTGCGGAAGAACTCCGGCGTTGACCGCGATGTTCTAGAGTCGTTACCGGTTTTTAAGTTTGGATCGTTGAAAGGGCAGAAGAACGGTCTCGATTGCGCGGTTTGTCTTTCGAGATTCGAGGATCCTGAGGTTTTGAGACTGTTGCCGAAGTGCAGGCACGCGTTCCACGTGGAGTGCGTGGACGCGTGGCTCGACGCGCACTCCACGTGCCCGCTCTGTCGCTACAAGGTCGAACCCAACGACGTCGTCGTTCTCGTGGAGGATGACGCGAAAGCGAAGTGTAATTCGGAGGGAGAATCGGACGTAAACGACGACGCGTCGAGAGGGGAAAACGAGAACGCGGAAACGACGTCGTCGTTGGACAGCGCGGAACACAGGTTGGAGCACCGTATTGTTGTGTCGCCTCGCGGTGGGGTCCACCAACGGTGGAGTGATTTTCAGCAACGAGATGTGTTGTACTTGACGTCGGAGATGGTCACGTGGAAGGCACGTGGAGATAGCAGTAGTAGTAATAGTAATGTTGTGGTGGAGAACGGTGGAGCGATGAAGAATTTGAGGAGTGTGTCGGAGGTTACGGGAATGAGGAATGTTCAAGGTTTACTAATACTGTTCTGA | 948 | 0.5506 | MDGATSLNPFQTLPIFTLVLITPFILGDDNSGATLPFPTLEDAAAAATSSPPGLSTNNYSPSDPFKPRTGVLVGVLTTTFSLTFLFLLYIKHCNDANNFANANTNSQQPSHVRKNSGVDRDVLESLPVFKFGSLKGQKNGLDCAVCLSRFEDPEVLRLLPKCRHAFHVECVDAWLDAHSTCPLCRYKVEPNDVVVLVEDDAKAKCNSEGESDVNDDASRGENENAETTSSLDSAEHRLEHRIVVSPRGGVHQRWSDFQQRDVLYLTSEMVTWKARGDSSSSNSNVVVENGGAMKNLRSVSEVTGMRNVQGLLILF | 315 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo9g01431 | 315 | CDD | RING-H2_EL5-like | 142 | 185 | - | - | |
Pumo9g01431 | 315 | ProSiteProfiles | Zinc finger RING-type profile. | 143 | 185 | IPR001841 | - | |
Pumo9g01431 | 315 | SMART | ring_2 | 143 | 184 | IPR001841 | - | |
Pumo9g01431 | 315 | MobiDBLite | consensus disorder prediction | 205 | 232 | - | - | |
Pumo9g01431 | 315 | MobiDBLite | consensus disorder prediction | 205 | 222 | - | - | |
Pumo9g01431 | 315 | Pfam | Ring finger domain | 142 | 185 | IPR001841 | - | |
Pumo9g01431 | 315 | SUPERFAMILY | RING/U-box | 122 | 190 | - | - | |
Pumo9g01431 | 315 | Coils | Coil | 311 | 315 | - | - | |
Pumo9g01431 | 315 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 54 | 308 | - | - | |
Pumo9g01431 | 315 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 117 | 193 | IPR013083 | - | |
Pumo9g01431 | 315 | FunFam | RING-H2 finger protein ATL43 | 118 | 192 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo9g01431 | Pumo-Chr9 | 41704771 | 41705718 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo9g01431 | 42 | 270 | C3H Transcription Factor Family | AT2G20030 | 36.531 | 2.01e-52 | 175 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo9g01431 | K19041 | - | vun:114195049 | 287.73 |