Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01431 ATGGATGGTGCAACTTCTTTGAACCCATTCCAAACGCTCCCCATCTTCACCCTCGTTCTCATCACCCCCTTCATCCTCGGCGACGACAACAGCGGCGCAACCCTTCCCTTTCCCACCCTCGAAGACGCCGCCGCCGCCGCCACGTCATCACCGCCGGGTCTCTCGACTAATAACTATTCCCCTTCGGATCCGTTCAAGCCGAGAACGGGCGTTCTAGTTGGCGTGTTAACCACCACGTTCTCCCTTACCTTCCTTTTCCTCCTCTACATCAAGCACTGCAACGACGCCAACAACTTCGCCAACGCTAACACGAACTCCCAGCAACCCTCGCACGTGCGGAAGAACTCCGGCGTTGACCGCGATGTTCTAGAGTCGTTACCGGTTTTTAAGTTTGGATCGTTGAAAGGGCAGAAGAACGGTCTCGATTGCGCGGTTTGTCTTTCGAGATTCGAGGATCCTGAGGTTTTGAGACTGTTGCCGAAGTGCAGGCACGCGTTCCACGTGGAGTGCGTGGACGCGTGGCTCGACGCGCACTCCACGTGCCCGCTCTGTCGCTACAAGGTCGAACCCAACGACGTCGTCGTTCTCGTGGAGGATGACGCGAAAGCGAAGTGTAATTCGGAGGGAGAATCGGACGTAAACGACGACGCGTCGAGAGGGGAAAACGAGAACGCGGAAACGACGTCGTCGTTGGACAGCGCGGAACACAGGTTGGAGCACCGTATTGTTGTGTCGCCTCGCGGTGGGGTCCACCAACGGTGGAGTGATTTTCAGCAACGAGATGTGTTGTACTTGACGTCGGAGATGGTCACGTGGAAGGCACGTGGAGATAGCAGTAGTAGTAATAGTAATGTTGTGGTGGAGAACGGTGGAGCGATGAAGAATTTGAGGAGTGTGTCGGAGGTTACGGGAATGAGGAATGTTCAAGGTTTACTAATACTGTTCTGA 948 0.5506 MDGATSLNPFQTLPIFTLVLITPFILGDDNSGATLPFPTLEDAAAAATSSPPGLSTNNYSPSDPFKPRTGVLVGVLTTTFSLTFLFLLYIKHCNDANNFANANTNSQQPSHVRKNSGVDRDVLESLPVFKFGSLKGQKNGLDCAVCLSRFEDPEVLRLLPKCRHAFHVECVDAWLDAHSTCPLCRYKVEPNDVVVLVEDDAKAKCNSEGESDVNDDASRGENENAETTSSLDSAEHRLEHRIVVSPRGGVHQRWSDFQQRDVLYLTSEMVTWKARGDSSSSNSNVVVENGGAMKNLRSVSEVTGMRNVQGLLILF 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01431 315 CDD RING-H2_EL5-like 142 185 - -
Pumo9g01431 315 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Pumo9g01431 315 SMART ring_2 143 184 IPR001841 -
Pumo9g01431 315 MobiDBLite consensus disorder prediction 205 232 - -
Pumo9g01431 315 MobiDBLite consensus disorder prediction 205 222 - -
Pumo9g01431 315 Pfam Ring finger domain 142 185 IPR001841 -
Pumo9g01431 315 SUPERFAMILY RING/U-box 122 190 - -
Pumo9g01431 315 Coils Coil 311 315 - -
Pumo9g01431 315 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 54 308 - -
Pumo9g01431 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 193 IPR013083 -
Pumo9g01431 315 FunFam RING-H2 finger protein ATL43 118 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01431 Pumo-Chr9 41704771 41705718 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01431 42 270 C3H Transcription Factor Family AT2G20030 36.531 2.01e-52 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01431 K19041 - vun:114195049 287.73