Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01428 ATGCTCCCGTTTCGGAGATTCTACGGGTTCGAGAGCTGGCTAGACCATGACTCAGGCCACGTTCCGAGCTCGTTGATTAAAAGGGCGGTGGAGTTGGACGGTGCCAGATCGAAAACGGAGCGCAAATCAACGGAGGCGTGTAAGAGTCACAGGGAAGCTGAGAGGAGACGCAGGCAGAGAATCAACTCTCACCTCTCCACCTTACGTTCTCTCCTTCCTAACGCCGCCAAGTCGGACAAGGCGTCGTTGCTGGGGGAAGTGGTTGAGCACGTGAAACGGCTGAGGAAGCAGGCCGATGACGTCGTGGAGTGCGGGGACTCGTCGTCCTCGTGCAGCGGTGGCGAACCGGGTTCGGTCCGGTCTGAGGCGTGGCCGTTTCCGGGGGAGTGCGACGAGGCGACGGTGAGTTACTGCGACGGTGGCGATGGTAAACCGAAGCGGGTGAAGGCGACGGTGTGCTGCGAGGACCGGCCCGGTCTGAACCGGGACGTGGCGCAGGCAATCCGGTCGGTTCGGGCCAGACCGGTTCGCGCGGAGATGATGACGGTTGGGGGAAGGTCGAAGAGTGTTGTGGTGGTAGAGTGGCCTCGTGAGGGAAAGGAAGAGGAGGAGGTGGAGGGAAAGGAGGTTGGGGCGCTGGAACGGGCTTTGAAGGCTGTGGTGGAGAATCGGGCTTTGGTGGGCTATGGAATGGGCCCGGTTATTGTGGGCCAGAAACGGGGTAGGGATTGTTGCGGTTCGCCAAGTAGCGAGGTTGACTCTGACTTCTTGCTGAGGAATGGGAACTTCTGCTAA 795 0.6038 MLPFRRFYGFESWLDHDSGHVPSSLIKRAVELDGARSKTERKSTEACKSHREAERRRRQRINSHLSTLRSLLPNAAKSDKASLLGEVVEHVKRLRKQADDVVECGDSSSSCSGGEPGSVRSEAWPFPGECDEATVSYCDGGDGKPKRVKATVCCEDRPGLNRDVAQAIRSVRARPVRAEMMTVGGRSKSVVVVEWPREGKEEEEVEGKEVGALERALKAVVENRALVGYGMGPVIVGQKRGRDCCGSPSSEVDSDFLLRNGNFC 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01428 264 PANTHER TRANSCRIPTION FACTOR BHLH30 35 242 IPR045847 GO:0003700|GO:0006355
Pumo9g01428 264 SUPERFAMILY ACT-like 148 221 IPR045865 -
Pumo9g01428 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 94 IPR011598 GO:0046983
Pumo9g01428 264 Pfam Helix-loop-helix DNA-binding domain 47 94 IPR011598 GO:0046983
Pumo9g01428 264 MobiDBLite consensus disorder prediction 35 57 - -
Pumo9g01428 264 Gene3D - 38 101 IPR036638 GO:0046983
Pumo9g01428 264 SMART finulus 51 100 IPR011598 GO:0046983
Pumo9g01428 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 102 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01428 Pumo-Chr9 41634691 41635954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01428 34 222 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 35.749 4.94e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo9g01428 HLH 7.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01428 - - gmx:100816394 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01428 9 41634691 41635954 Pumo9g01428 9 41634691 41635954 ECH