Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01425 ATGTTCTCAAAGCTTCACCCACATCAACAACAACAACACCATCATCAGCAGCAGCAACCTTTTCAATTCTCTCGGGAATGTCAAAAGTCCGAGGACGATGACAGCCGAAGCAGCGGTGGCCCCAACGCTGTCGTCGCCCAAACGCCTGTTTTGGGCGGCGGAAGCAGCGATGGGGCCACAATTGAAGTGGTGCGACGGCCCAGGGGTCGCCCGCCCGGGTCCAAGAACAAGCCCAAGCCGCCTCTCATAATAACGCGCGAGCCCGAGCCCGCGATGAGCCCATTCATCTTAGAAATCCCGGGCGGAAGCGACGTTGTCGAGGCCCTAGCCAGGTTCAGCCGCAGAAAGAACACGGGCCTGTGCGTTCTAACCGGTTCCGGAACCGTCGCCAACGCCACTCTACGTCAACCCTCCTTCACTCCCGGCGTCTCCACAGTCGCCACCGTCACGTTCCACGGCCGCTTCGATATCCTCTCCATGTCCGCCACCTTCCTCCTCCACGCCTCTCCGGCGGCGATCCCGCCCAGCTCCTTCGCGGTTTCCCTCGCCGGACCGCAGGGGCAGATCGTCGGCGGACTCGTCGCCGGGAGGCTCCTCGCCGCCGGGACGGTGTTCGTGATCGCATCGTCGTTCAACAATCCGTCGTATCACCGGCTGTCGTCGTCGTCGGACGCGCAGAACAACTCCGGCGGCTGCGACGCGCAGTCTCCTCCGGTGTCGGGTGGCGGCGCGGAGAGCGGGCACGTTCCGGCTGAGTCGTGTATGTACAGCTGTCACCTTCCTTCGGATGTGATTTGGGCTCCAACCCCTAGACCACCTTTCTGA 825 0.6267 MFSKLHPHQQQQHHHQQQQPFQFSRECQKSEDDDSRSSGGPNAVVAQTPVLGGGSSDGATIEVVRRPRGRPPGSKNKPKPPLIITREPEPAMSPFILEIPGGSDVVEALARFSRRKNTGLCVLTGSGTVANATLRQPSFTPGVSTVATVTFHGRFDILSMSATFLLHASPAAIPPSSFAVSLAGPQGQIVGGLVAGRLLAAGTVFVIASSFNNPSYHRLSSSSDAQNNSGGCDAQSPPVSGGGAESGHVPAESCMYSCHLPSDVIWAPTPRPPF 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01425 274 Pfam Plants and Prokaryotes Conserved (PCC) domain 94 213 IPR005175 -
Pumo9g01425 274 Gene3D - 93 228 - -
Pumo9g01425 274 FunFam AT-hook motif nuclear-localized protein 93 230 - -
Pumo9g01425 274 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 15 239 IPR014476 GO:0003680
Pumo9g01425 274 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 220 - -
Pumo9g01425 274 PIRSF ESCAROLA 2 265 IPR014476 GO:0003680
Pumo9g01425 274 ProSiteProfiles PPC domain profile profile. 89 235 IPR005175 -
Pumo9g01425 274 MobiDBLite consensus disorder prediction 1 25 - -
Pumo9g01425 274 CDD DUF296 94 209 IPR005175 -
Pumo9g01425 274 MobiDBLite consensus disorder prediction 218 235 - -
Pumo9g01425 274 MobiDBLite consensus disorder prediction 218 246 - -
Pumo9g01425 274 MobiDBLite consensus disorder prediction 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01425 Pumo-Chr9 41609687 41611248 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01425 57 273 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 61.572 7.17e-88 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01425 - - gmx:100811053 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01425 9 41609687 41611248 Pumo9g01425 9 41609687 41611248 ECH
Pumo9g01425 9 41609687 41611248 Pumo10g01545 10 20440120 20442177 PCT