Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01415 ATGGCGCCCAGTTTTGATTGCTTTTCGAGCCTTCTCTGTGCGGAGGACAACAGTATTTTTGACGAAAACGATTATGGGGGTTCGGTGGAGGTGTTGGAGGACACGTGGCAGCATCCTAGATATAATCGAAACCGTAGTCAAGGTGAGAACTTGGATGTCCCAACTGGGTGGCTTCCATTGCAGAGTGATGAGTGTTTGAGACTAATGGTGGAAAAGGAATGGGATCACTTGCCTAATGGTGATTATGTGAATAAGCTGAGGAGTGGGGATTTGGACTTTGGGGCCAGAAAAGAGGCCATTGATTGGATTGAAAAGGTTCGAGAGCACTTTGGTTTTGGACCTCTCTGTGCATATCTATCCATAAATTACTTGGACCGCTTCTTATCTGCATATGAGTTACCAAAGCATAGAGCTTGGACAATGCAATTGTTGGCTGTGGGGTGCTTATCTCTGGCAGCCAAAATGGAAGAGACTGATGTTCCTTTGTCTCTTGATTTGCAGGTGGGTGAATGTAAGTATATATTTGAAGCTAAAACAATACAGAGAATGGAGCTTCTGGTTCTGAGCACGTTGAGGTGGAGAATGCAGGCAATTACCCCATTTTCATTCATTGACTATTTCCTTTACAAGATCAATGATGATCAAAGTCCAATTGGAGCTTCAATTTTGCAATCCATCCAGCTTATACTGAGTACTGTAAGAGGAATTGACTTCTTAGAGTTCAGACCCTCAGAGATTGCAGCTGCAGTGGCACTATCTGTGGTGGGGGAGGGCCAAACAGTGCAAACTGAGAAAGCAATTTCTGTTCTGATTCAGCTTGTAGAAAAGGAGAGGGTCTTGAAGTGTGTTAAAATGATCCAAGAGCTGTCATCAAGTAGTGGCTGTTCTGCTAAGGGTGCTAGTGCTTCTGTTTCTGTTTCTGTCCCTAGCGTGCCCAAAAGCCCAATAGGGGTGTTGAACACTGCATGCTTCAGCTACAAAAGTGATGACACAAATGCTGCTTCATGTGCAAATTCTTCACATAACAATAGTCCAGATGCTAAAAGGAGGAAGCTAAACAAAACCTTTGGGGAATAG 1077 0.4392 MAPSFDCFSSLLCAEDNSIFDENDYGGSVEVLEDTWQHPRYNRNRSQGENLDVPTGWLPLQSDECLRLMVEKEWDHLPNGDYVNKLRSGDLDFGARKEAIDWIEKVREHFGFGPLCAYLSINYLDRFLSAYELPKHRAWTMQLLAVGCLSLAAKMEETDVPLSLDLQVGECKYIFEAKTIQRMELLVLSTLRWRMQAITPFSFIDYFLYKINDDQSPIGASILQSIQLILSTVRGIDFLEFRPSEIAAAVALSVVGEGQTVQTEKAISVLIQLVEKERVLKCVKMIQELSSSSGCSAKGASASVSVSVPSVPKSPIGVLNTACFSYKSDDTNAASCANSSHNNSPDAKRRKLNKTFGE 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01415 358 PANTHER CYCLINS 63 292 IPR039361 -
Pumo9g01415 358 MobiDBLite consensus disorder prediction 333 358 - -
Pumo9g01415 358 FunFam D2/4-type cyclin 79 192 - -
Pumo9g01415 358 SUPERFAMILY Cyclin-like 58 195 IPR036915 -
Pumo9g01415 358 SMART Cyclin_C_2 198 312 IPR004367 -
Pumo9g01415 358 MobiDBLite consensus disorder prediction 344 358 - -
Pumo9g01415 358 Pfam Cyclin, N-terminal domain 66 195 IPR006671 -
Pumo9g01415 358 Gene3D - 67 284 - -
Pumo9g01415 358 CDD CYCLIN_AtCycD-like_rpt1 95 193 - -
Pumo9g01415 358 Gene3D - 79 196 - -
Pumo9g01415 358 SMART cyclin_7 101 189 IPR013763 -
Pumo9g01415 358 ProSitePatterns Cyclins signature. 96 127 IPR006671 -
Pumo9g01415 358 SUPERFAMILY Cyclin-like 180 288 IPR036915 -
Pumo9g01415 358 Pfam Cyclin, C-terminal domain 198 295 IPR004367 -
Pumo9g01415 358 CDD CYCLIN_AtCycD-like_rpt2 198 286 - -
Pumo9g01415 358 FunFam D6-type cyclin 193 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01415 Pumo-Chr9 41393956 41396679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01415 25 337 Core Cell Cycle Gene Families AT2G22490 46.875 1.38e-87 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01415 K18810 - gmx:100812660 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01415 9 41393956 41396679 Pumo9g01415 9 41393956 41396679 ECH