Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01410 ATGGAATTCGACGAGCAAGAGGAGCATGAGGAGGAGGAAATGGGGATGCCGGAGCCAGCGGTAGCTGCGGCGGCGCCGAGTTACGACTCGCTCGGGAACTCGGCGGCGCGGTCAAAAATCGGCGGCGGCGAGGGACGGAAGGGCGCGTTCGGCGCGGCGGCGGTGCGGTACAGAGAATGCCAGAAGAACCACGCCGTGAGCTTCGGCGGCCATGCCGTCGACGGCTGCTGCGAGTTCATGGCCGCCGGAGAAGACGGCACGCTGGAGGCCGTCATCTGCGCCGCCTGCAACTGCCACCGGAATTTCCACCGCAAGGAGATCGACGGCGAGATGTCCTCCTTCCACCACCGCGCGCAGCCGCCGCCACCGCTGCACCACCACCACCAATTCTCCCCATACTACCACCACCGCGTCCCGCAGCACCCCGCCGCCGCCGGCTACCTCCACCACCACCTCGTGACGCCTCCGATGTCGCAGCACCGCCCTCTCCCCCTCCCGGCGGCCGCATCCGGCGGCGGCCTCAGCCGCGAAGAGGATGACATGTCAAATCCTAGCAGCAGCGGCGGCGGTGGCGGCGGCGGAGGATCCAAAAAGCGGTTCCGAACGAAGTTCACGCAGGAACAAAAGGATAAGATGCTGGCATTCGCGGAACAACTTGGTTGGAGAATCCAGAAACACGATGAATCTGCTGTGGAACAGTTCTGCGCTGAGACCAATGTGAAGCGAAACGTTCTCAAAGTTTGGATGCACAATAACAAGAACACTCTCGGTAAGAAACCCTAA 783 0.6309 MEFDEQEEHEEEEMGMPEPAVAAAAPSYDSLGNSAARSKIGGGEGRKGAFGAAAVRYRECQKNHAVSFGGHAVDGCCEFMAAGEDGTLEAVICAACNCHRNFHRKEIDGEMSSFHHRAQPPPPLHHHHQFSPYYHHRVPQHPAAAGYLHHHLVTPPMSQHRPLPLPAAASGGGLSREEDDMSNPSSSGGGGGGGGSKKRFRTKFTQEQKDKMLAFAEQLGWRIQKHDESAVEQFCAETNVKRNVLKVWMHNNKNTLGKKP 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01410 260 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 56 107 IPR006456 -
Pumo9g01410 260 MobiDBLite consensus disorder prediction 155 199 - -
Pumo9g01410 260 Pfam ZF-HD protein dimerisation region 55 107 IPR006456 -
Pumo9g01410 260 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 38 256 - -
Pumo9g01410 260 FunFam Zinc-finger homeodomain protein 2 185 258 - -
Pumo9g01410 260 SUPERFAMILY Homeodomain-like 184 258 IPR009057 -
Pumo9g01410 260 MobiDBLite consensus disorder prediction 1 45 - -
Pumo9g01410 260 Gene3D - 182 257 - -
Pumo9g01410 260 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 57 106 IPR006456 -
Pumo9g01410 260 NCBIfam homeobox domain, ZF-HD class 197 254 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01410 Pumo-Chr9 41273026 41274483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01410 1 256 ZF-HD Transcription Factor Family AT4G24660 53.516 4.67e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pumo9g01410 ZF-HD_dimer 6.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01410 - - gmx:100776421 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01410 9 41273026 41274483 Pumo9g01410 9 41273026 41274483 ECH
Pumo9g01410 9 41273026 41274483 Pumo10g01053 10 13661101 13661612 PCT