Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01396 ATGGGCATCCACACGGAATGCCCTGCACCTTCACCTGCACCACTGTTGATGAATTCGGATCATCATGGTCGTGCTTGTTTTTTTCTTCTTCTCCTTCTCGTGCCGTCCGTCACGGCACAGTCACAAAACTCGCCGTCACCGCCGCCGCCGATAGATCCTTTTACGAGGTTAAGGTTCGACAAGACCATGGCTGCGGTTTTGGTAATCCTCGTAGTGGTTTTCTTCGCGTTGGGGTTTGTGTCTATCTACACGCGCCAATGCGCGGAGCGAAGGATCAGAGGGAGGCTCGACCTGGCCGTGGCGATCGCCGGCGGGATGGAGCGCCGGCAGCACCACGGCCTCGACGCGGCGGTGGTGGACACGTTCCCGACCTTCGTGTACTCCGAGGTTAAGGCGCTGAAGATCGGGAGGGCCACGCTGGAATGCGCCGTGTGCCTCAACGAGTTCCGCGACGACGAAACGCTGCGTTTGATCCCTAAGTGCTGCCACGTGTTCCACCCCGACTGCATCGACGCGTGGTTGGTGAATCACTCTACTTGTCCCGTTTGCCGCGCCAACCTCGCGCCCAAGCCCGAGGACGCGCCTCCTTCCGTTGAGATTCAGATTCCGGATCCGGCCCAGCCCATTGGGCCCAATGCAGAGCCCGGTATTGATCCTAATTACATCAACCCGGTTGAAGAGCGTGAAGGTGAACGAAACAGAACTGTTACGGAGCCTCCGAGTGTGAGTTTAGATGAACCGAACCGTACTCAACCGGTTCGGTCTAGGTCAACTGGGTTGAGTATTGCCAGGATGTTTCCTCGCTCTCACTCGACGGGTCACTCGCTGGTTCAACCGGGCGAGGATTGTGAGCGGTTCACGCTGCGGTTGCCGGAGGAGGTGCGAGACCGGCTCGTGAGATCGGCGACGCTGAACCGGACAAAGAGTTGTGGGGTGACGTGGCAGCGGGAGAGCAGTGGGAGGAGGGGTTACAGGACGAGGAGTGTGGGGAGGTACGAGCGGTTCGGTGGGGAGGGCCGGTTGGACCGGTGGGGGTTCATGTGGACCCCACCGTTTTGGGGTAGGACCGGTTCGGTGAGGTCACCTAAGGTTACGAGGGTGAAGGATGAAGTGGACGTGGGAGAACGTTCCTCTGATCGTTTATTTTCCAAGGATTGA 1158 0.5889 MGIHTECPAPSPAPLLMNSDHHGRACFFLLLLLVPSVTAQSQNSPSPPPPIDPFTRLRFDKTMAAVLVILVVVFFALGFVSIYTRQCAERRIRGRLDLAVAIAGGMERRQHHGLDAAVVDTFPTFVYSEVKALKIGRATLECAVCLNEFRDDETLRLIPKCCHVFHPDCIDAWLVNHSTCPVCRANLAPKPEDAPPSVEIQIPDPAQPIGPNAEPGIDPNYINPVEEREGERNRTVTEPPSVSLDEPNRTQPVRSRSTGLSIARMFPRSHSTGHSLVQPGEDCERFTLRLPEEVRDRLVRSATLNRTKSCGVTWQRESSGRRGYRTRSVGRYERFGGEGRLDRWGFMWTPPFWGRTGSVRSPKVTRVKDEVDVGERSSDRLFSKD 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01396 385 Pfam Ring finger domain 141 184 IPR001841 -
Pumo9g01396 385 MobiDBLite consensus disorder prediction 365 385 - -
Pumo9g01396 385 PANTHER RING FINGER DOMAIN-CONTAINING 42 191 - -
Pumo9g01396 385 SMART ring_2 142 183 IPR001841 -
Pumo9g01396 385 SUPERFAMILY RING/U-box 125 197 - -
Pumo9g01396 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 190 IPR013083 -
Pumo9g01396 385 MobiDBLite consensus disorder prediction 206 258 - -
Pumo9g01396 385 FunFam E3 ubiquitin-protein ligase ATL6 102 190 - -
Pumo9g01396 385 CDD RING-H2_EL5-like 141 184 - -
Pumo9g01396 385 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Pumo9g01396 385 MobiDBLite consensus disorder prediction 236 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01396 Pumo-Chr9 40998312 40999874 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01396 16 376 Rapid Response to Elicitors AT3G05200 41.902 2.11e-73 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01396 K10664 - gmx:100815982 647.506