Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01395 ATGAGCATGCAAAAGGAGAGTCCTCTCATCACCAGACTCCACAGTTTCGACCAAGGCCATGCATGGCTGGCTCTATTGCACCTTCTCATTCACATCTCACCGGCAGTTACCGGTCAACCGGTAACCTCGCCGGTGGAACCCGACAGCAGCAAATCCGTAGTCACCATCATGGCCATCATCGCTGTCATGTTCCTCATCTCAGCCATCCTCTCCCTCTACTCCCGCAAGTGCTCCGACAGGCAGGGTCAGACACGTGGCATCCTCGACCTCGCCGTCCCAACCGGCGCAGCAGGTAACCCGTCGCAGACCGAACCGAACGGCCTCAACCAAGCCACCATAGAAACGTTCCCCACATTCCTCTACGCCGACGTGAAGGGTCTCAAAATCGGAAAAGACACGCTCGCATGCGCCGTGTGCTTGAACGAGTTCGAAGACGACGAGACCCTCCGCATGATCCCCAAATGCTGCCACGTGTACCACCGCGATTGCATTGATGTATGGTTAGCCTATCATTCCACGTGCCCGGTGTGTCGCGCCAACCTCGTTCCACAACCAGAAGACATAAACATGAACATGCCTCCGATGTTGTCCATTCAGATACCTAATGAACATGAACAAGAACACGAACATGAAAGTGAACATGAATACGAGACTGTTGTTGTTGTTAGTGAGGAACAACATAAGAGAGATATTGACGTGGAGTCACCGAAGGTGGATTTGCTTCGGAGGATTCGCACGTTGCAACATCAGAGCCGTCCATCACGGTCGAGATCCACGGGGTTCTTGTCTTCTCTTTTGTTTCCGAGATCAAACTCGACGGGGCAATTGGCGCAGCCTGTGGAGAACTACGAGAGGTTTACGCTAAGGTTACCGGAGGAGGTACGGAGCCAGATGGTGAACTCGACGGCGCTGAAGCGTGCGAATAGCTGCGTGTGCTTTAAGAGGATGAGCAGTGGCACGTGGGGGTATAGGACGAGAAGCGTGGGGAGTGGACGTGGAAGAGGGTGTGTTCAGTATGAGAGGTTTGGTGGTGAGGAACAGTGGGGTTTCACTTTGACGCCACCGAGTCTCGTTAGGAACGGTTGGAATAATAGATCCACGAGAAAATCACCGGTTCAGCGTTCGGGTGTGGCGTTGGATAATACTCATGCTGGTGAGAGATCCTCTGAATTCTTGCTTCTTGGGTAG 1188 0.532 MSMQKESPLITRLHSFDQGHAWLALLHLLIHISPAVTGQPVTSPVEPDSSKSVVTIMAIIAVMFLISAILSLYSRKCSDRQGQTRGILDLAVPTGAAGNPSQTEPNGLNQATIETFPTFLYADVKGLKIGKDTLACAVCLNEFEDDETLRMIPKCCHVYHRDCIDVWLAYHSTCPVCRANLVPQPEDINMNMPPMLSIQIPNEHEQEHEHESEHEYETVVVVSEEQHKRDIDVESPKVDLLRRIRTLQHQSRPSRSRSTGFLSSLLFPRSNSTGQLAQPVENYERFTLRLPEEVRSQMVNSTALKRANSCVCFKRMSSGTWGYRTRSVGSGRGRGCVQYERFGGEEQWGFTLTPPSLVRNGWNNRSTRKSPVQRSGVALDNTHAGERSSEFLLLG 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01395 395 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Pumo9g01395 395 CDD RING-H2_EL5-like 136 178 - -
Pumo9g01395 395 Pfam Ring finger domain 135 178 IPR001841 -
Pumo9g01395 395 PANTHER RING FINGER DOMAIN-CONTAINING 47 186 - -
Pumo9g01395 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 183 IPR013083 -
Pumo9g01395 395 SMART ring_2 136 177 IPR001841 -
Pumo9g01395 395 FunFam E3 ubiquitin-protein ligase ATL6 97 184 - -
Pumo9g01395 395 SUPERFAMILY RING/U-box 130 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01395 Pumo-Chr9 40967385 40968572 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01395 56 302 Rapid Response to Elicitors AT2G35000 37.891 2.05e-49 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01395 K10664 - gmx:100814384 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01395 9 40967385 40968572 Pumo9g01395 9 40967385 40968572 ECH
Pumo9g01395 9 40967385 40968572 Pumo10g01106 10 14225008 14226912 PCT