Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01394 ATGGCCCTAGAGGCCGTGGTTTTCCCACAAGATCCATTCACTTATGGTTGCAACAACAAGGACTTCTTGTACTCGTTAGTAGGAGGAGGAGGAGGAGGAGCAAGCCACGACTACGGTTTCCAAGCATCAGAAGACAAACCCCATGTGGGAATCATCAACACCAACAACATAGACCACACTCTGCATGCAAATTGGGATTCATCTTCTCCTTCGGTCTTGCAAAATGTCAAAGACCAATGGGATTCACACTCCTCCCCTGAAGCCTGCACTGTTGATCAGTCCCTTCCCGGAGCTTTTCCTCCTCCTCCCTCTTCCTCCGCCCAAGCCGCCACTGCCACCGGCCGCCGCAAACGACATCGCACCAAGAGCGCCAAGAACAAGGAGGAGATCGAGAACCAGAGGATGACCCACATTGCAGTTGAACGCAATAGAAGGAAACAGATGAACGAGTACCTCGCTGTGCTTAGATCCTTGATGCCTCCTTCTTATGTACAAAGGGTAGAGGAAGGGTGTCAGCTGAACACGGTGGATGAAATTGCAGCTGCTGTGCATCAATTATCACGCACGGTTCAGGAGGAAGCTGTTTTCAGCTGA 594 0.5118 MALEAVVFPQDPFTYGCNNKDFLYSLVGGGGGGASHDYGFQASEDKPHVGIINTNNIDHTLHANWDSSSPSVLQNVKDQWDSHSSPEACTVDQSLPGAFPPPPSSSAQAATATGRRKRHRTKSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRVEEGCQLNTVDEIAAAVHQLSRTVQEEAVFS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01394 197 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 186 IPR011598 GO:0046983
Pumo9g01394 197 Gene3D - 122 194 IPR036638 GO:0046983
Pumo9g01394 197 Pfam Helix-loop-helix DNA-binding domain 133 165 IPR011598 GO:0046983
Pumo9g01394 197 MobiDBLite consensus disorder prediction 80 129 - -
Pumo9g01394 197 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 176 IPR036638 GO:0046983
Pumo9g01394 197 PANTHER MAX DIMERIZATION, MAD 82 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01394 Pumo-Chr9 40949218 40952376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01394 1 179 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 44.041 6.43e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo9g01394 HLH 1.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01394 - - gmx:100803240 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01394 9 40949218 40952376 Pumo9g01394 9 40949218 40952376 ECH
Pumo9g01394 9 40949218 40952376 Pumo10g01107 10 14247619 14249437 PCT